RNA id: TU73727


Basic Information

Item Value
RNA id TU73727
length 823
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G55190
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 34380065 ~ 34407170 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGCTGGGTGTCCTGATCCAAAGCTGGAGCCAAATGGAGAGCCTGTGGTTTTGCCTGATCTGGCAGTGTTACCAAAACCAGAAGAGAAACCCGGTGGAGCCTGGTTGCTTTTGGGAGTACAAAGCAAACTGCGGCCATCATCAGACACAGTTAAGTCTGTACTGTTGCTTTTGAGTGAGAGCAGCTCTGCTCGGGGCTGGATCACCTGAAGCATCTCCTTCCACATAAAGAACTGCAGATGGCTTTCATAAGGCcccaaagagagagaggtattCACCACTTGGAGATCATTTGCTCTAGGCCGAAATAAATGCTCTGGAGTCACTGTGCCGTTACCCTCAGTCCAGCTCTTTAAGAACTTCTCTGAGTCTTCAATGTTCACTACTGATTTCAGTTTTCTCTCCAGCTCTCGGCTCTCACACAAAGCTGTTTCTATAGCATTTAAACTCACGACCATTTTCTCAACAGCATCTTCCTCTCTGTGTTTCAGCTCATTCTTTAGCtcatcttctctctttctcagaaACTGGTGCATCTCCTCAACCTGTCTGTGGATTTGGGTGGTCAGCTGCTGAGACTTCTCTTTGGTTTTTGTTATTTCTTCCCTCTGTGTGTTCGCTAGGCTCTCTGTAGCGAGGATATCACCACAAAGATTCTCCATGCCCTTCTCCAACTCCAGTCTGAGAGATGCAGCTGCTtctttgattggtttaaacttGTGTCCTTCATGCCTCTCCCCATCGCGGCATATGATACAAGCCAACTGCTGATCTGTGACGCAGAACAGTTTTAGCTTTTCTTCATGCTCAGGGCACAGCTCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73659 lncRNA downstream 126280 34266795 ~ 34267033 (-) True G55166
TU73627 lncRNA downstream 264517 34128238 ~ 34128796 (-) True G55137
TU73611 lncRNA downstream 265818 34117904 ~ 34127495 (-) False G55124
TU73609 lncRNA downstream 270793 34117904 ~ 34122520 (-) True G55124
TU73623 lncRNA downstream 286006 34097507 ~ 34107307 (-) True G55133
TU73741 lncRNA upstream 150011 34557181 ~ 34557690 (-) True G55203
TU73906 lncRNA upstream 423199 34830369 ~ 34878720 (-) True G55328
TU73923 lncRNA upstream 477238 34884408 ~ 34885590 (-) True G55343
TU73927 lncRNA upstream 655624 35062794 ~ 35066042 (-) False G55346
TU73929 lncRNA upstream 655624 35062794 ~ 35077065 (-) True G55346
XM_039799951.1 mRNA downstream 17810 34333598 ~ 34375503 (-) False slco4a1
XM_039799952.1 mRNA downstream 17810 34333598 ~ 34375503 (-) True slco4a1
XM_039799950.1 mRNA downstream 39782 34333598 ~ 34353531 (-) False slco4a1
XM_039799249.1 mRNA downstream 102244 34236566 ~ 34291069 (-) True ntsr1
XM_039801847.1 mRNA downstream 227349 34134259 ~ 34165964 (-) False snphb
XM_039800655.1 mRNA upstream 383443 34790613 ~ 34842286 (-) False plagl2
XM_039800653.1 mRNA upstream 383443 34790613 ~ 34842286 (-) True plagl2
XM_039800654.1 mRNA upstream 383443 34790613 ~ 34841640 (-) False plagl2
XM_039800673.1 mRNA upstream 480615 34887785 ~ 34899218 (-) True LOC120559153
XM_039800672.1 mRNA upstream 480615 34887785 ~ 34899215 (-) False LOC120559153
TU73658 other downstream 102426 34290406 ~ 34290887 (-) False ntsr1
TU73607 other downstream 265818 34024018 ~ 34127495 (-) False G55124
TU73610 other downstream 265818 34117904 ~ 34127495 (-) False G55124
TU73620 other downstream 300195 34087970 ~ 34093118 (-) True G55131
TU73247 other downstream 1506023 32880193 ~ 32887290 (-) True G54834
XR_005639223.1 other upstream 862728 35269898 ~ 35277854 (-) True LOC120559165
XR_005639224.1 other upstream 862730 35269900 ~ 35277854 (-) False LOC120559165
XR_005639222.1 other upstream 862730 35269900 ~ 35277854 (-) False LOC120559165
TU74116 other upstream 997434 35404604 ~ 35409766 (-) True G55492
XR_005639221.1 other upstream 1479931 35887101 ~ 35898736 (-) False si:ch73-70k4.1

Expression Profile