RNA id: TU73929


Basic Information

Item Value
RNA id TU73929
length 2077
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G55346
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 35062794 ~ 35077065 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGGCTTTGTCTTCCCTCAGAGCAAGATTCCAAACCAAACAGTGCTTAAACGCCTCATTAAGACAGCAACTAcaccttcatttttttttttttttttttttttaaatcactgaaaATGAAAGCACTTTTTATGGAGACAGGAAAACACACCGACTTTGacatctttgaaaaaaaaaaaaaaacactgtgacAACGCCATTAGAGCTgcagtggaagaaaaaaaaaatggactcAAAACTAAATCAAATCACCACTTTGCAtagattccccccccccctccttcatCTCCAACAATGCACCACAGCATAGCACAGACACAAGACtgttacacacaaacaaaaaaaactatcagGTTTACTCTTGGATTTGTTGATATCAAGAATAGAGATCTGACACATTTGGAAACGccataagaaaccatatcaaaCAGACAATGCTATGTCATTATAAAGGGATAAGTGATTTATTAAATCAAGTCTTTGTTTCATTCTGTACAACAAAAACCAGACATTGTACCGCGTGGGATTTCCTGATCTCGGGGACTCCGTTACACAATCGAGCGCCATTTCAGCACGGCCGCACGCTGCGTTGGAAAGGTAGAAAATATCACGTCGGCACAACAAACCCAAACAAATCCTCGCCGTctcgaaaaaaaaaactgtgtgaaATCATTTTCGTTTTTCAATAGTTGTGCATTTGTCTTGTAGCCGGTAATCTTGTAGGAGCCGGTTCCGTGGGGAGGGAAGTCAGAGCATTATAGGTTAGTAACACGCTACTTTAATAAAAGGTAGAACTACTTCTGTACTGAATGCCACTTTGTAATGCTTAAAAGAGCAAGAAGGGCACACGAAAAAGTGAAGAGGATTAGGCAATTACACTTTAAAAGTATGCAAGAATTCTGCTCCACGTGGCTCTGTGGAAATCATCTGCCTCACTGCTCTACTCAGTTAGCACGtgaagagtgttttttttttttttttttttttttttttttttttaaataaagtgttacaGGCTGTTCCTCAGTTTAAATGTCCCCCTTGCTTTCATAGTATGTTCAGCTGACATTCCAATAGTGCTAACCCTAGACTGTGAAGTTTGAAGAAGAGCTTTGCTAAAGCAACACGCTGCCTGTTAATTCCAGCTTGTTATGGGCTGCAATATTGTGCACTAGGCACTGAAACAGAAACCTGTTCTATTTAAACCTGCACACATTCTGATGCCAAGCTAGTATACGCGCAGTTGtatgtagagctgggcgatacggagaaaatcaaatatcccgatattttttgaCCACATACCTCGATATTGTggtgatattgtagggttgacaattggtgctttcacaaaatatgcacacaatgagattttttgaaaaataatcatcagttatgttgATATAACCACTATGCGGGTGAAGGCAAATAATGGACCAGCTAGAagtctggtgtgttcagaaaattacatcactctactgtaatacagcctttaaaaccaggaaaaagacaacacttgtgtcatatcacgatatccaaaattttaagacgatatctagcctcacaTATCGATACATTTCCCAGCCCTAGTTGTATGGACATTGTacggggaatttgggacactaaactacACGTATACCTTAGAGTAGTCCTCTTCGCCTCCAAACATGTTAACAGTATTTGATTGTATATACAACCATACATATCTAATGTATACATTTAAATTTGCACTACAAGTGATGTTTTCATCTTTGTTGTTGACATAGCTACACTGTATGTTGTTGTGAACACGATTTCATACACATCTTAAACAGGTTTCACGAGCTTTTATACTACAGTTATACTCACATGAAAGCTTCTTGTCCATGAACTTCTTCAACTCTGGTGGATGGGCTTTGCTCATTTTGCCTTAATTTTCTAAAAGCCGACACAGTTGCTCGTATGCTTGTCGTTTTCACAAAACCGCGGAAGGACAACGTGCGCTGAGGGACCGGAAGTTCACCGGAAAACGACTTCTTGCATGTCTGCACACCGCCGCCTTGAGGCCGGGAggcgaaattacgaatcccacgccaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73923 lncRNA downstream 177204 34884408 ~ 34885590 (-) True G55343
TU73906 lncRNA downstream 184074 34830369 ~ 34878720 (-) True G55328
TU73741 lncRNA downstream 505104 34557181 ~ 34557690 (-) True G55203
TU73721 lncRNA downstream 655624 34380065 ~ 34407170 (-) True G55190
TU73953 lncRNA upstream 21684 35098749 ~ 35100257 (-) True G55368
TU73966 lncRNA upstream 33315 35110380 ~ 35150623 (-) True G55376
TU73989 lncRNA upstream 99733 35176798 ~ 35177057 (-) True G55396
TU73995 lncRNA upstream 137023 35214088 ~ 35216619 (-) True G55400
TU74004 lncRNA upstream 168592 35245657 ~ 35246547 (-) True G55409
XM_039800460.1 mRNA downstream 27842 34906437 ~ 35034952 (-) True myt1b
XM_039800673.1 mRNA downstream 163576 34887785 ~ 34899218 (-) True LOC120559153
XM_039800672.1 mRNA downstream 163579 34887785 ~ 34899215 (-) False LOC120559153
XM_039800653.1 mRNA downstream 220508 34790613 ~ 34842286 (-) True plagl2
XM_039800706.1 mRNA upstream 1734 35078799 ~ 35086447 (-) True tmed4
XM_039800709.1 mRNA upstream 87678 35164743 ~ 35166257 (-) True cfap126
XM_039800689.1 mRNA upstream 185899 35262964 ~ 35266073 (-) False crebzf
XM_039800690.1 mRNA upstream 185899 35262964 ~ 35266073 (-) True crebzf
XM_039800657.1 mRNA upstream 189636 35266701 ~ 35269429 (-) True las1l
TU73658 other downstream 771907 34290406 ~ 34290887 (-) False ntsr1
TU73607 other downstream 935299 34024018 ~ 34127495 (-) False G55124
TU73610 other downstream 935299 34117904 ~ 34127495 (-) False G55124
TU73620 other downstream 969676 34087970 ~ 34093118 (-) True G55131
TU73247 other downstream 2175504 32880193 ~ 32887290 (-) True G54834
XR_005639223.1 other upstream 192833 35269898 ~ 35277854 (-) True LOC120559165
XR_005639224.1 other upstream 192835 35269900 ~ 35277854 (-) False LOC120559165
XR_005639222.1 other upstream 192835 35269900 ~ 35277854 (-) False LOC120559165
TU74116 other upstream 327539 35404604 ~ 35409766 (-) True G55492
XR_005639221.1 other upstream 810036 35887101 ~ 35898736 (-) False si:ch73-70k4.1

Expression Profile