RNA id: TU73953


Basic Information

Item Value
RNA id TU73953
length 1016
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G55368
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 35098749 ~ 35100257 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagcgcccaTTAAACCTATTTTGCGTTATAACAGCGTTATAAATGTCGCTGCTGAAGAACAGACATTTGCTTCTGAAGCGTTTCCAGTGGACACTGCGACAGAGCCGCGACTGAGCCGGAGTGCAGCCAGCAAAATACGCACTGCCCTAACTGCACAGAGTTATGAACAGTGATGTGATTGCATACTGGTGTGTGAATAGTGATGCAATACTTAGCTTGAAAAAATGAACAAACTACAAAGTCAGGGACTACATATATTTAAACTGAACTGAACGTAACAATTGAAATGAACAAAGTGATTTGTGTGCAGATAGGCTCAACAGCTGTGTGACTGTACCTGTGCAGTGAGGACCGGAACAGTCTCCAGGGAGCCTTTTTGTTGCTCCACCTCCTCCTTCAGTTTATCAATCAGATCCTGCTTCAGGGCCAGCGCTCTCTCTGCGTCCTCTAGTCGGCTGCACAGATCCCCTCCCtggaagacaaacacacacacagatcaatgCTAGGCCTGAATCCATAAGTAAGAGAGCAAAACTTATGAtggtaaataaatgtttaaatgtgtttttacctCACTCTTCAGTTTAGAATCATAGTCTCTAAATAGACACGTGTAGGCATGCTGCAATTGTGTCAGTTTTTTCCTTCTCCTCTGTGACGacatgtctctctgtcttcagGGCCTGCTCCAGGCTCTGggtctgcagcagcagcttgtCCATGGCCACATGGTGCTGTTTCCTCTGCTGCTCCAGCTCCCGCTCTGCCACCTGCAGGGCCTTCATCTTATTGCACAGCCTACACACACGTAGAGTAGGGACAAACACAtcagcacacatgcacacctacaGATGAAAAGTCTCTACATACTGTTGGTTAGAGGTGTCCCATCAGAATTGTCAAGTCTTGCCTAATGTCGACTAATCGTCGAATCGTGTGGGTGGGGGCGATGGTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73945 lncRNA downstream 13551 35069015 ~ 35085198 (-) True G55360
TU73929 lncRNA downstream 21684 35062794 ~ 35077065 (-) True G55346
TU73928 lncRNA downstream 21684 35074577 ~ 35077065 (-) False G55346
TU73927 lncRNA downstream 32707 35062794 ~ 35066042 (-) False G55346
TU73923 lncRNA downstream 213159 34884408 ~ 34885590 (-) True G55343
TU73966 lncRNA upstream 10123 35110380 ~ 35150623 (-) True G55376
TU73989 lncRNA upstream 76541 35176798 ~ 35177057 (-) True G55396
TU73995 lncRNA upstream 113831 35214088 ~ 35216619 (-) True G55400
TU74004 lncRNA upstream 145400 35245657 ~ 35246547 (-) True G55409
TU74123 lncRNA upstream 314750 35415007 ~ 35417799 (-) True G55496
XM_039800706.1 mRNA downstream 12302 35078799 ~ 35086447 (-) True tmed4
XM_039800460.1 mRNA downstream 63797 34906437 ~ 35034952 (-) True myt1b
XM_039800673.1 mRNA downstream 199531 34887785 ~ 34899218 (-) True LOC120559153
XM_039800672.1 mRNA downstream 199534 34887785 ~ 34899215 (-) False LOC120559153
XM_039800653.1 mRNA downstream 256463 34790613 ~ 34842286 (-) True plagl2
XM_039800709.1 mRNA upstream 64486 35164743 ~ 35166257 (-) True cfap126
XM_039800689.1 mRNA upstream 162707 35262964 ~ 35266073 (-) False crebzf
XM_039800690.1 mRNA upstream 162707 35262964 ~ 35266073 (-) True crebzf
XM_039800657.1 mRNA upstream 166444 35266701 ~ 35269429 (-) True las1l
XM_039800699.1 mRNA upstream 169639 35269896 ~ 35277854 (-) False LOC120559165
TU73658 other downstream 807862 34290406 ~ 34290887 (-) False ntsr1
TU73607 other downstream 971254 34024018 ~ 34127495 (-) False G55124
TU73610 other downstream 971254 34117904 ~ 34127495 (-) False G55124
TU73620 other downstream 1005631 34087970 ~ 34093118 (-) True G55131
TU73247 other downstream 2211459 32880193 ~ 32887290 (-) True G54834
XR_005639223.1 other upstream 169641 35269898 ~ 35277854 (-) True LOC120559165
XR_005639224.1 other upstream 169643 35269900 ~ 35277854 (-) False LOC120559165
XR_005639222.1 other upstream 169643 35269900 ~ 35277854 (-) False LOC120559165
TU74116 other upstream 304347 35404604 ~ 35409766 (-) True G55492
XR_005639221.1 other upstream 786844 35887101 ~ 35898736 (-) False si:ch73-70k4.1

Expression Profile