RNA id: TU73966



Basic Information


Item Value
RNA id TU73966
length 1088
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G55376
representative True

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 35110380 ~ 35150623 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


cacacactcataacGATGCAGGAGGAAtccaaatgttttattattttaagtcACTTCATGAGTTTGTATTTGCATTTACCTTCAGCCTGCTATTATCATGACAGCCTCTACACAAAAATCTGTCAAATACATTCAAGGGGTAAGGCTAGACATGTGGGAGCCTCTGACAATTAGCACACTGttgtaaaaaatgaaaaaaaaaacaccaataagTTTCAGGGCCCTTGTTCAGCTCTATGTCCTGTGAATGCTGTAAGGTGGTTACTTCCATCAGGGCATGTTTGTCTGTAAACATTATTCTATTTCAGTCCcaagaggaaacaagagaagtTGGCTTTGCTTCAGTGAGTGACCCCCATCAGGCCCAACGCTTACCTGACCCAAACTATTCTGTAATCCACTTACTATGATTGTGAGAAAACAGCCAACTTTAGAGATTAATGGCCCTCAGCTGAAGTTAACCAACTGAATGTGGTCTTGATAAATCATGTTTTACTCCAGTAAAGACTCCACTCTTGCGTCATTTATTTCAGCCGATACTTAAAATGTGCAAGGTGAAAAGCGAAAAGCGGTTTTGAAGTCCTGAAGTCCAATTTAAACCTGACAATTCAGAGTGAGAAGCCTTTGCAAAGTGAGGGCATTTTTGCCATTGCTAGGTGCTAATTTACAGTTACGGTTAGGGAACAAGTGTGCTCAGTGGGCATCTTCTTAAAGAAACACAGTAAGTacattgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacattgtctttatttttataattcGAAGCACTTTGTGTTACTTTTGCatgaaaagtgctatacaaataaaagatTGACTGTTTGCAGAACTTCAGAGCATAATGACACAGGTGTAGTTTACCCGTGCGGTTTAGCGTTGCCATGGAGAACATGGCTTCCTGATAGGCCTCTTTTACTTCCTCTTTGGTGACGACTAGCTTGATCTTGTTCCACCTTTCAGTCTGGTGAAATATAAACAGAGAGACAGTAAGGGGCACATAATGGGGAGTGTGTGGGGAGAAGTGCAAGCACAGAAAaatgtcaataat

Function


GO: NA

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU73953 lncRNA downstream 10123 35098749 ~ 35100257 (-) True G55368
TU73945 lncRNA downstream 25182 35069015 ~ 35085198 (-) True G55360
TU73929 lncRNA downstream 33315 35062794 ~ 35077065 (-) True G55346
TU73928 lncRNA downstream 33315 35074577 ~ 35077065 (-) False G55346
TU73927 lncRNA downstream 44338 35062794 ~ 35066042 (-) False G55346
TU73989 lncRNA upstream 26175 35176798 ~ 35177057 (-) True G55396
TU73995 lncRNA upstream 63465 35214088 ~ 35216619 (-) True G55400
TU74004 lncRNA upstream 95034 35245657 ~ 35246547 (-) True G55409
TU74123 lncRNA upstream 264384 35415007 ~ 35417799 (-) True G55496
XR_005639226.1 lncRNA upstream 281760 35432383 ~ 35448470 (-) True LOC120559180
XM_039800706.1 mRNA downstream 23933 35078799 ~ 35086447 (-) True tmed4
XM_039800460.1 mRNA downstream 75428 34906437 ~ 35034952 (-) True myt1b
XM_039800673.1 mRNA downstream 211162 34887785 ~ 34899218 (-) True LOC120559153
XM_039800672.1 mRNA downstream 211165 34887785 ~ 34899215 (-) False LOC120559153
XM_039800654.1 mRNA downstream 268740 34790613 ~ 34841640 (-) False plagl2
XM_039800709.1 mRNA upstream 14120 35164743 ~ 35166257 (-) True cfap126
XM_039800689.1 mRNA upstream 112341 35262964 ~ 35266073 (-) False crebzf
XM_039800690.1 mRNA upstream 112341 35262964 ~ 35266073 (-) True crebzf
XM_039800657.1 mRNA upstream 116078 35266701 ~ 35269429 (-) True las1l
XM_039800699.1 mRNA upstream 119273 35269896 ~ 35277854 (-) False LOC120559165
TU73658 other downstream 819493 34290406 ~ 34290887 (-) False ntsr1
TU73607 other downstream 982885 34024018 ~ 34127495 (-) False G55124
TU73610 other downstream 982885 34117904 ~ 34127495 (-) False G55124
TU73620 other downstream 1017262 34087970 ~ 34093118 (-) True G55131
TU73247 other downstream 2223090 32880193 ~ 32887290 (-) True G54834
XR_005639223.1 other upstream 119275 35269898 ~ 35277854 (-) True LOC120559165
XR_005639224.1 other upstream 119277 35269900 ~ 35277854 (-) False LOC120559165
XR_005639222.1 other upstream 119277 35269900 ~ 35277854 (-) False LOC120559165
TU74116 other upstream 253981 35404604 ~ 35409766 (-) True G55492
XR_005639221.1 other upstream 736478 35887101 ~ 35898736 (-) False si:ch73-70k4.1

Expression Profile