RNA id: TU74004



Basic Information


Item Value
RNA id TU74004
length 832
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G55409
representative True

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 35245657 ~ 35246547 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CCCCGACCCACGTTCAGCTCAGTTATACGGAGGTCTCCACGCAGTAGAGATGGGCCAGGTGAGGGGCGGAGGGTTTCCCCGACCTGTCCCTGCCGTGATGGAtgtggtggtgttggtggtggtggtgatggggaCTCCGGTTGCTGGGGGTAACTGCGTTGCTGCTGTTTCTGTTGCTGTGGGTGTCtgttgagctgctgctgctgctgctgctgttgttgttgttgtttcggTTGCACGGGGTCACCGGGAGGCTGTACTGGCGGTAGGGGCGGGTGGGGTGGGTGCGGGCGGGGGGCGGGGGCTGAGCGGGAGGGGGTGGCGTCGGTGTCGTCGATCAGCGGGATGTTGTGGATGAGGTCATTGATGAGGAACTCCGGGTGGGCCATGAAGTTGTGGATGGAGTTGCGGGATTCCGGTTTCTCCCGGCCCTCGTACAGGTTACTACGGAATGCTTTCACCACTCGCATCTGCCGAAAGAAAGGAAGACGAGGGAGAGACCACAAGAAAGACAGAGGTGATAGTTAGACATAACAAAAGGTAAAATAGAGACAAGGGAAacccagcagacagacagacttgtGTCctccagcagacagacagacagtgacagacagacggacggacggacTCAGGGCCAGGTGGCTACAGTCAAAGTTTATACAAGATAACTTCTTTTGGTCACATTAGTGTTTCAGTTAATTTCCTATAAACATTTTGACTGAGctgaaaatactgaaaaaataagTTAAGTTAAAAGACTATTTGGACATTTGGGAAAAAACGCTtatttgattcttttttttttgtcaagatTTAGATTAGAAGATTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU73995 lncRNA downstream 29038 35214088 ~ 35216619 (-) True G55400
TU73989 lncRNA downstream 68600 35176798 ~ 35177057 (-) True G55396
TU73966 lncRNA downstream 95034 35110380 ~ 35150623 (-) True G55376
TU73953 lncRNA downstream 145400 35098749 ~ 35100257 (-) True G55368
TU73945 lncRNA downstream 160459 35069015 ~ 35085198 (-) True G55360
TU74123 lncRNA upstream 168460 35415007 ~ 35417799 (-) True G55496
XR_005639226.1 lncRNA upstream 185836 35432383 ~ 35448470 (-) True LOC120559180
TU74158 lncRNA upstream 239185 35485732 ~ 35634395 (-) True G55511
TU74137 lncRNA upstream 244556 35491103 ~ 35576323 (-) False G55505
TU74161 lncRNA upstream 248003 35494550 ~ 35503023 (-) True G55514
XM_039800709.1 mRNA downstream 79400 35164743 ~ 35166257 (-) True cfap126
XM_039800706.1 mRNA downstream 159210 35078799 ~ 35086447 (-) True tmed4
XM_039800460.1 mRNA downstream 210705 34906437 ~ 35034952 (-) True myt1b
XM_039800673.1 mRNA downstream 346439 34887785 ~ 34899218 (-) True LOC120559153
XM_039800689.1 mRNA upstream 16417 35262964 ~ 35266073 (-) False crebzf
XM_039800690.1 mRNA upstream 16417 35262964 ~ 35266073 (-) True crebzf
XM_039800657.1 mRNA upstream 20154 35266701 ~ 35269429 (-) True las1l
XM_039800699.1 mRNA upstream 23349 35269896 ~ 35277854 (-) False LOC120559165
XM_039800700.1 mRNA upstream 23351 35269898 ~ 35277854 (-) False LOC120559165
TU73658 other downstream 954770 34290406 ~ 34290887 (-) False ntsr1
TU73607 other downstream 1118162 34024018 ~ 34127495 (-) False G55124
TU73610 other downstream 1118162 34117904 ~ 34127495 (-) False G55124
TU73620 other downstream 1152539 34087970 ~ 34093118 (-) True G55131
TU73247 other downstream 2358367 32880193 ~ 32887290 (-) True G54834
XR_005639223.1 other upstream 23351 35269898 ~ 35277854 (-) True LOC120559165
XR_005639224.1 other upstream 23353 35269900 ~ 35277854 (-) False LOC120559165
XR_005639222.1 other upstream 23353 35269900 ~ 35277854 (-) False LOC120559165
TU74116 other upstream 158057 35404604 ~ 35409766 (-) True G55492
XR_005639221.1 other upstream 640554 35887101 ~ 35898736 (-) False si:ch73-70k4.1

Expression Profile