RNA id: XM_039800694.1


Basic Information

Item Value
RNA id XM_039800694.1
length 1802
RNA type mRNA
GC content 0.54
exon number 5
gene id si:ch73-70k4.1
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 35874622 ~ 35898736 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCACCTGACCCCAGGACGGTAGGTGGCGGTGGCGGTGGCGGTGCGGCAGCGACCCGCCAGCTGAACcgagacagagaagaagaaggaagttCCCGTTCGTCACACTAGCGCGAAATGTCGAAGATGCTGAAATCATGGCTGAAACATATTCAAAGTCTAAACTTAAACGAAATAAGCCGTCTGTCAAAGATGTCCAGCCGGGGACGGGTTCGCGGGGAACCCTGAAGAGGAGTCCCACAGAGACAGCAGAGGCTGGGAGGGCAGCGTGGTGGACCAGCGAGCCGCTGCCGGCTGTGGAGAGTCTGTGGGCGTTGTGTGCTCTGCCGTGTCTGGAGAATCGGCACCGGGACCTGGTTCCTGATCTTCCACATCCATCTACAGCGAGACCCACAGCGCTGAGGTCCGGTGAACAGCGGTGGTGTGACCTCAGCGAAGACGTCGCTCCCTTCCCCGAACCCTCTCCACCCTCTCCGAGGACTCGCTCCAGTCCCAGCCCCTCCCCGCGGGAGCTCTCGGTGCAGACGCAGCCCGTCCCGGACCCGGCGGACAGACAGCTGTCGTCTCGCGGCAGCCAAAGGCCGCGGCCGTCCCTCCACGGCTGGGAGGGGCCGCCGTCGTCAGCCGGACCCTCGAGGGCGGGGGGGGGCGAGGGGAGGAGAGGACGGGAGACCGGACCGCTTCTCACGGGCCAGGCGAAAGTGTCTGACGGCCGAGTTCCTCTGCAGAGGAAGGGGGAGgatagagaggaagaggaggggcaGAGTCGTGtcggaggagatggaggagcagcaggaggggCGGGGCTTCAAAGCTGCCCCATGTGCCTGCTGGACTTCCCTGTTGGGTTCACCCAGATGGACTGTGACGGCCACCTGGCCCAGTGTCTGTCCGAGGTGAACGTGGACATGACCTGGTGAGGCCGACGGGACGCTGGCTGGCTGCTGTCCAGagatctgaggagcagttaaccatagtcctcacaaatccaccggaggttagaacgccaacacagaggaagaggaaggtgacggacatccggccgaaaatgagaGGACATCCGGCAGAACAATCCCAGAAATTAAACATCATTGATATAGACTACTCTGGGTCATACCTCAAGGGGagagaaccagaaccaggatGATAACctctttggagaaaaaaaaacaacctttttctGCGTTATGAAAGAGGGTTAGTTTTTTAGCAGGTGCACTTTGGAAGCTCTGGTCACAATGACTGTGATGACTCCCTGCTGTCATGATGTCAGGTTATCCTCTTTAGACACTCGATCCATAATTTGGCTCCACTTGAGCGTGTGCACTTGGCCTCCGATGCCTTTGTTTCCAGCTGGTCAAGACGACCCGCTAAACTGAAATGACAATCCAGCCTGGCCTCATCAGAGACAtcgagagagagacccaaatggAACCGGGCCACATCCTCCTTTTCACAAAGCTGCTTTTTCACAGAAATATATCCGACCGTTTACATTTctgtagagctgggcgatatggacaaaaaaaaaaaaaaaatctaatatcacaatatttttgaccaaatacatcgatgtcgatattgtcGGGTTGACTAAATATTAAAACAATGAGAGTTTGGACAAATAATcgccaataatgtggatacactgactaagtgggtaaaggcaatgacgatatctagcctcacgTATCGATGTGTATATAATATCCATATGTTGCTCAGCCCTACATTTCTGTTGAAATGAATGATCGATTTAAAGCTAAAATGATGTCATGATGATCATGTTGTATTTGGAGTGTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74233 lncRNA downstream 59993 35825478 ~ 35826247 (-) True G55578
TU74234 lncRNA downstream 59993 35825478 ~ 35826247 (-) False G55578
TU74140 lncRNA downstream 176779 35619508 ~ 35709461 (-) False G55505
TU74251 lncRNA upstream 62194 35960930 ~ 36016130 (-) True G55590
TU74261 lncRNA upstream 184350 36083086 ~ 36083333 (-) True G55599
TU74264 lncRNA upstream 185781 36084517 ~ 36084866 (-) True G55602
TU74354 lncRNA upstream 612623 36511359 ~ 36511658 (-) True G55658
TU74365 lncRNA upstream 641798 36540534 ~ 36542635 (-) True G55666
XM_039800461.1 mRNA downstream 502011 35311194 ~ 35384229 (-) True flna
XM_039800713.1 mRNA downstream 582225 35298496 ~ 35304015 (-) True emd
XM_039800711.1 mRNA downstream 599030 35286360 ~ 35287210 (-) True mrpl49
XM_039800701.1 mRNA downstream 608386 35269900 ~ 35277854 (-) False LOC120559165
XM_039801534.1 mRNA upstream 354440 36253176 ~ 36270025 (-) False LOC120559648
XM_039801533.1 mRNA upstream 354440 36253176 ~ 36270011 (-) True LOC120559648
XM_039800544.1 mRNA upstream 374135 36272871 ~ 36447792 (-) False plch2a
XM_039800543.1 mRNA upstream 374135 36272871 ~ 36390181 (-) False plch2a
XM_039800539.1 mRNA upstream 374135 36272871 ~ 36357974 (-) True plch2a
TU74116 other downstream 476474 35404604 ~ 35409766 (-) True G55492
XR_005639223.1 other downstream 608386 35269898 ~ 35277854 (-) True LOC120559165
XR_005639224.1 other downstream 608386 35269900 ~ 35277854 (-) False LOC120559165
XR_005639222.1 other downstream 608386 35269900 ~ 35277854 (-) False LOC120559165
TU73658 other downstream 1595353 34290406 ~ 34290887 (-) False ntsr1
XR_005639240.1 other upstream 660653 36559389 ~ 36559959 (-) False LOC120559361
TU75206 other upstream 783163 36681899 ~ 36724209 (-) True G56160
XR_005639341.1 other upstream 827860 36726596 ~ 36744132 (-) False LOC120559655
TU75262 other upstream 986129 36884865 ~ 36895490 (-) False rhoaa
TU75263 other upstream 986129 36884865 ~ 36895490 (-) False rhoaa

Expression Profile