RNA id: TCONS_00074089


Basic Information

Item Value
RNA id TCONS_00074089
length 896
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_037734
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 19027152 ~ 19041027 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAACCTAGAGAGTTTGTGTACACGTACAAGTGTACGTAAAAGATGACGTATTGTAAACGTATTATTGAGGGAGGGTGATCGTCCACAAAACTCAGCGAGCTCCATCAGCTCTGCCATCTGAGAGGATATACTGGCACCATGACTCTCGGCTCACCTTGGCACCAAGGTCAGGAGGACAAAGACTGGAAAATGATGAAAATTATTCAACTTGACCACGGCAAAAATTTCACAACATGCCTGATGACACAAGCAAGTTCTCCCCCATGGGCTGCTTCACTAAGTATTAAAGCAAAGCAGAAAAGCAAAGAATAAACATTTAAGATCTCCTTTTCTTCGAGACTCTTGGGATTTATCACTTCCCAAGGGCTGCGCTTCTGCACAGCCATCTGGAGGAGATGAGATGACATTCCTGAAGAACCTGCGCTCAAAATGGACAACTGCTTTTTACATCCTGACACAACAATTTACATACTTTATTTCAAGGAGCAATGAGTCCCAAACTGACTTTGTAATAAATTAAAGTTTCTTGACTCCTTGAAATACACATTGTGTTGCTTTTGATGGTGTTTTAAATTGTGTTTGTGGTAAATAAAGACGTACAGGATGTCTCTTGTTCAACATTTTGTTCTGGccgtttatttattgttttgtctttttggTGGATAGAGGCTTTATTTTGCTCAGGGAAAGTTCACTCATTGtaatcaccatttactcaccttcaagtggttataaacctgtATGGATTGTGacattctgctgaacacaaaggaagatattttgaaggaagctgaaaacctgtaactattatCATTCATAGACATCCatattagaaataataattaatatgaaaGTCTAAGCTCACCTGTTTTTGAGATAAGCTCCACATCTGACC

Function

GO:

id name namespace
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0006811 ion transport biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0044309 neuron spine cellular_component
GO:0043197 dendritic spine cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074084 lncRNA downstream 115437 18908203 ~ 18911715 (-) False XLOC_037732
TCONS_00075331 lncRNA downstream 115530 18908203 ~ 18911622 (-) False XLOC_037732
TCONS_00075330 lncRNA downstream 115552 18908203 ~ 18911600 (-) False XLOC_037732
TCONS_00075329 lncRNA downstream 302696 18720676 ~ 18724456 (-) True XLOC_037729
TCONS_00075328 lncRNA downstream 449959 18572373 ~ 18577193 (-) True XLOC_037728
TCONS_00074093 lncRNA upstream 46911 19087938 ~ 19092294 (-) True XLOC_037737
TCONS_00075332 lncRNA upstream 380219 19421246 ~ 19421872 (-) True XLOC_037741
TCONS_00074097 lncRNA upstream 427742 19468769 ~ 19471475 (-) True XLOC_037742
TCONS_00075333 lncRNA upstream 613679 19654706 ~ 19658313 (-) True XLOC_037746
TCONS_00074973 lncRNA upstream 730748 19771775 ~ 19773421 (-) True XLOC_037750
TCONS_00074087 mRNA downstream 10857 19007959 ~ 19016295 (-) False XLOC_037733
TCONS_00074086 mRNA downstream 12180 19007959 ~ 19014972 (-) False XLOC_037733
TCONS_00074088 mRNA downstream 12180 19010563 ~ 19014972 (-) True XLOC_037733
TCONS_00074085 mRNA downstream 115544 18909360 ~ 18911608 (-) True XLOC_037732
TCONS_00074083 mRNA downstream 149555 18876036 ~ 18877597 (-) True XLOC_037731
TCONS_00074091 mRNA upstream 11347 19052374 ~ 19069164 (-) True XLOC_037736
TCONS_00074092 mRNA upstream 32529 19073556 ~ 19092322 (-) False XLOC_037737
TCONS_00074094 mRNA upstream 91858 19132885 ~ 19161982 (-) True XLOC_037738
TCONS_00074095 mRNA upstream 299189 19340216 ~ 19366538 (-) True XLOC_037739
TCONS_00074098 mRNA upstream 436660 19477687 ~ 19489264 (-) True XLOC_037743
TCONS_00074078 other downstream 652967 18322583 ~ 18374185 (-) True XLOC_037727
TCONS_00074071 other downstream 1609524 17415241 ~ 17417628 (-) False XLOC_037723
TCONS_00074065 other downstream 2202977 16823285 ~ 16824175 (-) True XLOC_037719
TCONS_00074054 other downstream 3127599 15898473 ~ 15899553 (-) False XLOC_037714
TCONS_00074051 other downstream 3237788 15782048 ~ 15789364 (-) False XLOC_037713
TCONS_00074096 other upstream 307097 19348124 ~ 19348239 (-) True XLOC_037740
TCONS_00074104 other upstream 674555 19715582 ~ 19716857 (-) True XLOC_037748
TCONS_00074105 other upstream 709324 19750351 ~ 19756068 (-) False XLOC_037749
TCONS_00074106 other upstream 713418 19754445 ~ 19756102 (-) True XLOC_037749
TCONS_00074107 other upstream 820283 19861310 ~ 19863679 (-) True XLOC_037751

Expression Profile

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