RNA id: TCONS_00074093


Basic Information

Item Value
RNA id TCONS_00074093
length 858
lncRNA type retained_intron
GC content 0.39
exon number 3
gene id XLOC_037737
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 19073556 ~ 19092322 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAGTCTTTTACGTTGGCAAGCGTGTTTATATACATAATTTCAACGGAAAGTATGGACTGATATTTATAAAGAACTAGGCTATATGGAAAAGTGGAACCTATGGAAAATAAATCACTGGATGTCTCAATGAGGGCAGATAAAACACGACTTCTGGAGTCACCTAAATGCGATTCCGACATTGCACAATGTCTGTGATTACAAGTATACTTGCATTCACTGTTCTGTTTACCCTAGTGCTATGCATGGAAATACCTGCCCCGGAACATCTAAACCTGTCGTCCCAATATTTTGTCCACTTGTTGTCTTGGAAAATGGGGCCAGGCTCTCCTGATGGTGTCCACTACTCcgtcaaaataaaaacaaaaagTGGGAGTATGGTGGTGGTGGAGGCCTGTGAAAATGTGACATCCCCTCTACTGTGTAATCTTACAGAAGCCTTTTCTGATGTGGAGGAAATCTATTACATTATTGTTTCTGCCGCTCTAGGCAGCCATATGTCACCGAATGCGTCCTATACCCCATTCAAACCCATTGATAACAGTAAGACACTCTACTGTGATTTTGTTTATAGGTCttcatgaacaaaaaaaaaacatgctcgaTGTTAATTAGGGGTGCCAAATTAATAATACATATGATGATTAGAAATATAGATGAGGGGGATTTGGTATCTGTTTATTTGATACATAATATATTTGACTAGAAGGGCAAAAACAAAAACCCTCCTGACCAACAGGCTCAGGCTGATGAGCTTAAAGTTTATAAACTGCAGCAGAGCGTAAAGCCATCttctaaaaaaaatagtttgagtGTGCTTTCACACTTTTGCCCCGTTACCATCTGGTATTTTTTCGAT

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004896 cytokine receptor activity molecular_function
GO:0004904 interferon receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070905-2 Enables interferon receptor activity. Predicted to be involved in cytokine-mediated signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in hepatitis B and immunodeficiency 45. Orthologous to human IFNAR2 (interferon alpha and beta receptor subunit 2).

Ensembl:

ensembl_id ENSDART00000142035

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074089 lncRNA downstream 46911 19027152 ~ 19041027 (-) True XLOC_037734
TCONS_00074084 lncRNA downstream 176223 18908203 ~ 18911715 (-) False XLOC_037732
TCONS_00075331 lncRNA downstream 176316 18908203 ~ 18911622 (-) False XLOC_037732
TCONS_00075330 lncRNA downstream 176338 18908203 ~ 18911600 (-) False XLOC_037732
TCONS_00075329 lncRNA downstream 363482 18720676 ~ 18724456 (-) True XLOC_037729
TCONS_00075332 lncRNA upstream 328952 19421246 ~ 19421872 (-) True XLOC_037741
TCONS_00074097 lncRNA upstream 376475 19468769 ~ 19471475 (-) True XLOC_037742
TCONS_00075333 lncRNA upstream 562412 19654706 ~ 19658313 (-) True XLOC_037746
TCONS_00074973 lncRNA upstream 679481 19771775 ~ 19773421 (-) True XLOC_037750
TCONS_00075334 lncRNA upstream 765059 19857353 ~ 19864309 (-) False XLOC_037751
TCONS_00074091 mRNA downstream 18774 19052374 ~ 19069164 (-) True XLOC_037736
TCONS_00074087 mRNA downstream 71643 19007959 ~ 19016295 (-) False XLOC_037733
TCONS_00074086 mRNA downstream 72966 19007959 ~ 19014972 (-) False XLOC_037733
TCONS_00074088 mRNA downstream 72966 19010563 ~ 19014972 (-) True XLOC_037733
TCONS_00074085 mRNA downstream 176330 18909360 ~ 18911608 (-) True XLOC_037732
TCONS_00074094 mRNA upstream 40591 19132885 ~ 19161982 (-) True XLOC_037738
TCONS_00074095 mRNA upstream 247922 19340216 ~ 19366538 (-) True XLOC_037739
TCONS_00074098 mRNA upstream 385393 19477687 ~ 19489264 (-) True XLOC_037743
TCONS_00074099 mRNA upstream 458073 19550367 ~ 19585848 (-) False XLOC_037744
TCONS_00074100 mRNA upstream 462842 19555136 ~ 19583704 (-) True XLOC_037744
TCONS_00074090 other downstream 58471 19029353 ~ 19029467 (-) True XLOC_037735
TCONS_00074078 other downstream 713753 18322583 ~ 18374185 (-) True XLOC_037727
TCONS_00074071 other downstream 1670310 17415241 ~ 17417628 (-) False XLOC_037723
TCONS_00074065 other downstream 2263763 16823285 ~ 16824175 (-) True XLOC_037719
TCONS_00074054 other downstream 3188385 15898473 ~ 15899553 (-) False XLOC_037714
TCONS_00074096 other upstream 255830 19348124 ~ 19348239 (-) True XLOC_037740
TCONS_00074104 other upstream 623288 19715582 ~ 19716857 (-) True XLOC_037748
TCONS_00074105 other upstream 658057 19750351 ~ 19756068 (-) False XLOC_037749
TCONS_00074106 other upstream 662151 19754445 ~ 19756102 (-) True XLOC_037749
TCONS_00074107 other upstream 769016 19861310 ~ 19863679 (-) True XLOC_037751

Expression Profile

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