RNA id: TCONS_00075332


Basic Information

Item Value
RNA id TCONS_00075332
length 490
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id XLOC_037741
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 19421246 ~ 19421872 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCATCCGATACGCCGAAGACGCGCTGCCCATCTCGCTCCCCGCTCTCAGCCTCCGCTGCCCGGGACTGCCGTTCTGTGCCTCCGTGACGGACCTAATAGAAAGTTCTGACCGTGTCTTTGAACCGGAGCAGATTTAACAACGTCGTAGAGACTGTGTTGCTCATTGCCACTGATCTCTTAACTCGTCGCCCCCCCTTTCACTCCCACTAGTGCGCGCGCGGGAAGAGAAGAAGCGCGCGCACTTCTTGTGATCACCATAGTAACCGAGCTCTACAAGGACGCGCGAGGATGCAGCGCAGTGTGAAACCGAAGGGTCATGAAGCAGGCATATTTCCAGAGCTAACATTTCGAGTTTTTTGGTTCCTCCTGGGCTAGTCCAAAACATGAAGGTAACTAGGGATACTGCTATCATGAAAACGATCATCAACACCCTTTACAAAGACGGTGAGCCATGTATGTCATAAATAAAAAAGAGCTGGAAAGTTAACG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074093 lncRNA downstream 328952 19087938 ~ 19092294 (-) True XLOC_037737
TCONS_00074089 lncRNA downstream 380219 19027152 ~ 19041027 (-) True XLOC_037734
TCONS_00074084 lncRNA downstream 509531 18908203 ~ 18911715 (-) False XLOC_037732
TCONS_00075331 lncRNA downstream 509624 18908203 ~ 18911622 (-) False XLOC_037732
TCONS_00075330 lncRNA downstream 509646 18908203 ~ 18911600 (-) False XLOC_037732
TCONS_00074097 lncRNA upstream 46897 19468769 ~ 19471475 (-) True XLOC_037742
TCONS_00075333 lncRNA upstream 232834 19654706 ~ 19658313 (-) True XLOC_037746
TCONS_00074973 lncRNA upstream 349903 19771775 ~ 19773421 (-) True XLOC_037750
TCONS_00075334 lncRNA upstream 435481 19857353 ~ 19864309 (-) False XLOC_037751
TCONS_00074974 lncRNA upstream 1212865 20634737 ~ 20637010 (-) False XLOC_037754
TCONS_00074095 mRNA downstream 54708 19340216 ~ 19366538 (-) True XLOC_037739
TCONS_00074094 mRNA downstream 259264 19132885 ~ 19161982 (-) True XLOC_037738
TCONS_00074092 mRNA downstream 328924 19073556 ~ 19092322 (-) False XLOC_037737
TCONS_00074091 mRNA downstream 352082 19052374 ~ 19069164 (-) True XLOC_037736
TCONS_00074087 mRNA downstream 404951 19007959 ~ 19016295 (-) False XLOC_037733
TCONS_00074098 mRNA upstream 55815 19477687 ~ 19489264 (-) True XLOC_037743
TCONS_00074099 mRNA upstream 128495 19550367 ~ 19585848 (-) False XLOC_037744
TCONS_00074100 mRNA upstream 133264 19555136 ~ 19583704 (-) True XLOC_037744
TCONS_00074101 mRNA upstream 182995 19604867 ~ 19610436 (-) True XLOC_037745
TCONS_00074102 mRNA upstream 259697 19681569 ~ 19762801 (-) False XLOC_037747
TCONS_00074096 other downstream 73007 19348124 ~ 19348239 (-) True XLOC_037740
TCONS_00074090 other downstream 391779 19029353 ~ 19029467 (-) True XLOC_037735
TCONS_00074078 other downstream 1047061 18322583 ~ 18374185 (-) True XLOC_037727
TCONS_00074071 other downstream 2003618 17415241 ~ 17417628 (-) False XLOC_037723
TCONS_00074065 other downstream 2597071 16823285 ~ 16824175 (-) True XLOC_037719
TCONS_00074104 other upstream 293710 19715582 ~ 19716857 (-) True XLOC_037748
TCONS_00074105 other upstream 328479 19750351 ~ 19756068 (-) False XLOC_037749
TCONS_00074106 other upstream 332573 19754445 ~ 19756102 (-) True XLOC_037749
TCONS_00074107 other upstream 439438 19861310 ~ 19863679 (-) True XLOC_037751
TCONS_00074108 other upstream 523762 19945634 ~ 19964772 (-) True XLOC_037752

Expression Profile

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