RNA id: TCONS_00074099


Basic Information

Item Value
RNA id TCONS_00074099
length 1684
RNA type mRNA
GC content 0.49
exon number 12
gene id XLOC_037744
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 19550367 ~ 19585848 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGACAGAGTAAAGACGACCAGAAGAGCCAAAATGACCAGATCAACACAAAGACAAAATATCAAGCTAATCAGATAGCATGGACCTGTTCTCTATTAGAATAGCTAATCTGAAATCAACCGTAAGTGTTCGAGTCCTGCTGCTAATATGAGTGTATGAAGTAAGTCATGGCTGATCCAGAGGAACTGGAGTCTGTGGCAGGTGTAGATGTTGGGGCTGATGTAAATGGAGAATCTATTCCCTGTATAGAAAGCACACAAACAGATGGTCAGGAAACAGAGCATCAGATATATCCCAACCAATCAGAGGAGGTCTCTGTCACCGAGACAGACATGCCTTCTGTTGATGTCCTGCAAAATGTCAGTCACCTGGACGGTTCAAGTGCCAGTCCTGTCCCAGAAGTCCAACCCACATCTGAAGTACCTTCCAAAGAGCCTCTAACAGAAACCCACTCAACACAACCCAGCCTGTCATTGCCAGTTACTAAAGTCCAGCCCTTTGTCACAGAGGAAAAAACCCTCCGCAGCAGCTTGTTTGCACGCAGGATGGAGATACTAATCATCACTTGTGTCCTTCTCACTCTCATTATAGTGCTTGGCATTGGACTGGGTGTTGGACTGAGCTGTGCTGGGAAGTTTCGATGTTTCTCCTCCAGGTGTATTAGCATCTTAGCACAGTGCGATGGGCATTTTGACTGTGAACATGGAGAAGATGAGCTCAGTTGTGtgcgTCTGAGTGGAAAGAGCTCTGTACTTCAGGTGCTTAATGATGGAGTCTGGAGGACGGTTTGTGCTGAGAACTGGAACTCCAATCTTTCACTCTCGGCTTGTAAGCAGCTTGCTTGTGGTTCAAGACCCAAGTTCAGCGCTCGTATAGTTGGTGGCAACCTGTCAGCTGAGGGTCAGTTCCCCTGGCAGGTCAGCCTACACTTCCAGAATGAGCACCTCTGTGGCGGATCCATCATAACGTCTCGCTGGATCCTCACTGCTGCCCACTGTGTGTACGGGATTGCTTATCCTATGTATTGGATGGTCTATGCGGGATTGACCGAGCTGCCACTGAATGCAGTAAAGGCTTTCGCCGTGGAGAAGATCATTTATCACAGCCGCTACAGACCCAAAGGCCTGGACCATGATATTGCTCTGATGAAACTGGCGCAGCCCCTCACCTTCAATGGTATGGTGGAGCCTATCTGTCTGCCTAACTTTGGAGAGCAGTTTGAGGACGGTAAAATGTGCTGGATCTCAGGATGGGGTGCCACTGAGGATGGAGGAGATGCAAGTGTGTCTCAGCACTGTGCAAGTGTCCCTCTGATCTCCAATAAGGCCTGCAGTCAGCCGGAGGTTTACCAGGGCTATCTAACAGCAGGAATGATCTGCGCTGGCTATCTGGATGGAGGAACAGACTCCTGTCAGGGTGATAGCGGTGGTCCTCTGGCATGTGAGGATTCCTCCATCTGGAAATTGGTGGGGGCCACAAGCTGGGGTCAAGGTTGTGCAGAAAAGAACAAACCCGGGGTTTACACACGCATCACACAGTCCCTCACCTGGATACATCTGCAGATGGAGAGAGAAGAAATTCTCCATCCGCTAACAGTCAGCTCTAATTACTGAGTTTAATCGTGGGAAATCAGACTTCTGCCTTCAACCAACTTGTGCATTCATATCTGGAAAGGTTTTATTTG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-70 Predicted to enable scavenger receptor activity and serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 8 and sensorineural hearing loss. Orthologous to human TMPRSS3 (transmembrane serine protease 3).

Ensembl:

ensembl_id ENSDART00000157653

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074097 lncRNA downstream 78892 19468769 ~ 19471475 (-) True XLOC_037742
TCONS_00075332 lncRNA downstream 128495 19421246 ~ 19421872 (-) True XLOC_037741
TCONS_00074093 lncRNA downstream 458073 19087938 ~ 19092294 (-) True XLOC_037737
TCONS_00074089 lncRNA downstream 509340 19027152 ~ 19041027 (-) True XLOC_037734
TCONS_00074084 lncRNA downstream 638652 18908203 ~ 18911715 (-) False XLOC_037732
TCONS_00075333 lncRNA upstream 68858 19654706 ~ 19658313 (-) True XLOC_037746
TCONS_00074973 lncRNA upstream 185927 19771775 ~ 19773421 (-) True XLOC_037750
TCONS_00075334 lncRNA upstream 271505 19857353 ~ 19864309 (-) False XLOC_037751
TCONS_00074974 lncRNA upstream 1048889 20634737 ~ 20637010 (-) False XLOC_037754
TCONS_00074975 lncRNA upstream 1049125 20634973 ~ 20636627 (-) True XLOC_037754
TCONS_00074098 mRNA downstream 61103 19477687 ~ 19489264 (-) True XLOC_037743
TCONS_00074095 mRNA downstream 183829 19340216 ~ 19366538 (-) True XLOC_037739
TCONS_00074094 mRNA downstream 388385 19132885 ~ 19161982 (-) True XLOC_037738
TCONS_00074092 mRNA downstream 458045 19073556 ~ 19092322 (-) False XLOC_037737
TCONS_00074091 mRNA downstream 481203 19052374 ~ 19069164 (-) True XLOC_037736
TCONS_00074101 mRNA upstream 19019 19604867 ~ 19610436 (-) True XLOC_037745
TCONS_00074102 mRNA upstream 95721 19681569 ~ 19762801 (-) False XLOC_037747
TCONS_00074103 mRNA upstream 96961 19682809 ~ 19699728 (-) True XLOC_037747
TCONS_00074109 mRNA upstream 490708 20076556 ~ 20372977 (-) True XLOC_037753
TCONS_00074110 mRNA upstream 1220486 20806334 ~ 20853439 (-) False XLOC_037758
TCONS_00074096 other downstream 202128 19348124 ~ 19348239 (-) True XLOC_037740
TCONS_00074090 other downstream 520900 19029353 ~ 19029467 (-) True XLOC_037735
TCONS_00074078 other downstream 1176182 18322583 ~ 18374185 (-) True XLOC_037727
TCONS_00074071 other downstream 2132739 17415241 ~ 17417628 (-) False XLOC_037723
TCONS_00074065 other downstream 2726192 16823285 ~ 16824175 (-) True XLOC_037719
TCONS_00074104 other upstream 129734 19715582 ~ 19716857 (-) True XLOC_037748
TCONS_00074105 other upstream 164503 19750351 ~ 19756068 (-) False XLOC_037749
TCONS_00074106 other upstream 168597 19754445 ~ 19756102 (-) True XLOC_037749
TCONS_00074107 other upstream 275462 19861310 ~ 19863679 (-) True XLOC_037751
TCONS_00074108 other upstream 359786 19945634 ~ 19964772 (-) True XLOC_037752

Expression Profile

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