RNA id: TCONS_00075333


Basic Information

Item Value
RNA id TCONS_00075333
length 3608
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id XLOC_037746
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 19654706 ~ 19658313 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aacaaaaaagtttgaCATTAATAATGATTGTTATAATATTAAGGGCAGCTATCACCAATAAAGATTTACTATAATActatgtaattaatttattttagaatgTATAATTTACCGTTTTTAACAGTTACTTCTCTCACTTGATAATTACAACTGTTAAATCAATTTGCCCTTCTGAATACCAAAAATGCCACAGGAAAGATATTGCCTTAATTTCTGACATATATTTTCTAAAAGTATAGCGCATATAAATACATCCAAGTCAATAATGCTTTtcaaaaacaacttatttttaaatatatattttgtttaaatcaaGAGCATCATTTAATATGGGAACTTTTTCATCATTGTATAAAAATGTCTAGAGAGATAAGACATTTTTCAGGCATGCTATTCATTGTAAAgcaatgtcattttgtttttgtggGTACAATGACTGTTATGTAGCATTTTAGCTGTTTAGCATTAGcttctattatattttaatttatatgaaCTAGAATGgtgcagcatggtggtgcagtgggtagcataatagcctcacagcaagaagttagctggtttgagcctcgactgggtcaattggcatttctgtgtggagtttgcatattctctctgtgttcgcgtgggtttcctcaaggtgcttcaatttcccccacagtccaaaaacatgtggtataggtgaattgggtaggcaaaattgtccttagtgtatgagtgtatatgtatgtttcccagtgatggattgcagctggaagggcatctgctgcgtaaaacatgctggataagttggcatttcattccgctgtggcaaccacagattaacaaagagactaagccgaaaagaaaatgaataaatgaactacaAAGTCTTCTGCTGtacaacgaaaaaaaaaaaacatgctatagGACCTTTGGTGCTACGAGTGGTTTATTAACATATAGGACATACTGATACATAATTTAACGAAGTACATTTTTGTAATCATATCTCATTCAGCCTGTACAAAAGTGGCTTAAGCATTTCTGGTATGGACACAGTTGTTACACCTCTACATTtatcacacacacattaacaggAACAACCACACCTTATTTAAACATCAACAATCCGCTCATGTTTACCATCATGTTATGATTAAGAGTTATCTGTGGTGCTCAGAAGAAAGACTGTTGGCCTTCTTCTGAGCAATTCCAAGCATGGTTAAGATCCTGTTGCAACTGTGGATAATTATAGCAGGGTTATTGTGGTTATGGTGGTTTCGAGCCCAAAAAATTTCCTATCATGATGTCAGCGTTCCTATGGAACTGGAAAAGCCAACATAATCTCACAGCAATTAAGTCTCTTTTATGTTTTAAGCCCCAACTGatccaatggttgggtttaggggtggggattGGGGACTAGCttcctttttaaatgtgtttttgtatgaacaaatttgtatgaattagcaaacttttctgacaatactgtttgcttttgaaaaaaatatgtacttttcCTCCTGAGTTTGGGCTCAAAAAACAATTCTAAAAATAGAAAGTTCTTCAGAGACAAAAGGCAATGTCCACATAATGTACATGGGTATATTTTTAAATGGGCTTTTCCCTGCTTTCATTTATTCtacatgaaaatgcaaaaatgcacTGTGGTGTAAGTTAAGAGCATGCCGAACCAACAGGTGCCATAATGAGACCTTTATGCTGGGTCCACTCCAAACAGGGAATTAAGTATTTTCATGAGTAAAACTGCAAACAAATCAATGCAAACATGAGAACAGAGGTGGATTTCCCTACCGCGGATGAATGAcatgaaatatgaaatatgcGTTTGCCACAAATGGGCAGAATTTTGCCTCATTCTCCTCTTCCACATTTAGTGTGAACCCTGCCGTGTTGATCAGTCAGAAAGAAGAAAACAGTACGCTTTCTGATGTCATGAAGCCAAACTCTGGTTGTAGTGTCCACACGTCCACACTGTACCTGCGGTTATGGAAAATTTAAAAAGTCAATAAACATATGGGTGTACCTGTCCTTTCCATTCAAGAAAGTCAAAATTTGTGCAAATTTCCATTATTGTTTGTTGCGCCGAAGGGTTCATTCGTCAATACAATCCAAATACAAGTATTAATATGTCCAAACATGTTGAGAAGTAAAACCTTTCAATGGTTGTACGTATTCACAGTGCAGTTAAAGAtagtttgtgtctgttttgtaaAGCTTTTTGATTCTAGCTAAACACTGTAACCAAATGTAGCCCCATGTGAATATAAGAGCAGGACACAGAAGCGGCTGAGTTATGACTGAATGCATTCAAATGAACATAGCTTCACGTGTCTTTAGATAAACGCATTAACTTATAGACTAAATCTATGCATTTTCATGAGCAACTGTATTTTCTTATCTTTATCTACTATAGCTGAcgagacatttttcttttcttttttttaaacgttGTGTCTACTTATAAATGGTTGACTTGTGTTTGACAAAGttggttgtttttgtttgtttgaaggtCAGTTTAAAATGTTAATCGTTCTGCTCATTTATTCTGATGTATAGACTACAGTAGTTGGATTTTGTGCATGTACATGTCTTCTACTTGTTTGAAAACAATAATATCTTGATTCATCAGTCTGGCTTGTTGTGGGTAAACTTCTTGTAAtgtaattttcaataaaaaagttCATAAGCCTGGTTTTCAACCAACAACATTTAAGCTGTTTACATCACAAAGACAAAAAAAGGGGAAAGTTTTCCATGAAGGTTAAGTTGCTGACGTTTTTGAAATTATTCCAGTTTACAAAGATCCACAATAGAACACTCACTGTGTCTCAGTTGGTTTACTCACACATACTTGCCTTGTAAgtatttgagtgtgtaacagaggaGTTGGCAGATTTTAGAACATACTACATAATCACATTTTTAACAGTCACAATGTTATTATATGCTGATCAAATATCAGCAAAGGTAATCGTAACATGAAATAAGCTAAGATATGAATTATTAGCCTAATCAATCAGATGCATTTACTGCCCAACAAAGGCaagcattatgtttttttatccATATTTTTAGTAGGCAGTAAGCATGTGCAAAGATCCGTACTTTCCATTCCAGCTATAAATAGTTGACCACTGGTATAACTCATTTACAcagtttgacacatttaaaaatatatatcaacaaGGAAGTATAGTACGCAAATTTGGATGCAGAAACAATATATGTCAATAGACAGGTTCCAGAGGTATAAATATTTTCAGTCACACTTTAAGGTTTCATaagttattgttagttaatgtatgtacataacaaactattattaattaacaatactttaatcattgtttaagaatgcatttaaatccatatgcatgcttgtttacattagttaatgggTTGGTTAAACTAGcaataaacagttttatttgcATTAACGTAAACAAAGATggtaaaaatactgtaataaatgtattgttcattgtttgtacaGGCTAGTAAACCTATTCACATTAACTATTTGTTAACGTATATATTACCCTAATTTTTTAAttggaaaaaaacatttgtaactGTAATTGGCAAACCATCagaag

Function

GO:

id name namespace
GO:0042982 amyloid precursor protein metabolic process biological_process
GO:0042983 amyloid precursor protein biosynthetic process biological_process
GO:0042984 regulation of amyloid precursor protein biosynthetic process biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:1903018 regulation of glycoprotein metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0010559 regulation of glycoprotein biosynthetic process biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0042734 presynaptic membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074097 lncRNA downstream 183231 19468769 ~ 19471475 (-) True XLOC_037742
TCONS_00075332 lncRNA downstream 232834 19421246 ~ 19421872 (-) True XLOC_037741
TCONS_00074093 lncRNA downstream 562412 19087938 ~ 19092294 (-) True XLOC_037737
TCONS_00074089 lncRNA downstream 613679 19027152 ~ 19041027 (-) True XLOC_037734
TCONS_00074084 lncRNA downstream 742991 18908203 ~ 18911715 (-) False XLOC_037732
TCONS_00074973 lncRNA upstream 113462 19771775 ~ 19773421 (-) True XLOC_037750
TCONS_00075334 lncRNA upstream 199040 19857353 ~ 19864309 (-) False XLOC_037751
TCONS_00074974 lncRNA upstream 976424 20634737 ~ 20637010 (-) False XLOC_037754
TCONS_00074975 lncRNA upstream 976660 20634973 ~ 20636627 (-) True XLOC_037754
TCONS_00075335 lncRNA upstream 1106237 20764550 ~ 20782512 (-) True XLOC_037755
TCONS_00074101 mRNA downstream 44270 19604867 ~ 19610436 (-) True XLOC_037745
TCONS_00074099 mRNA downstream 68858 19550367 ~ 19585848 (-) False XLOC_037744
TCONS_00074100 mRNA downstream 71002 19555136 ~ 19583704 (-) True XLOC_037744
TCONS_00074098 mRNA downstream 165442 19477687 ~ 19489264 (-) True XLOC_037743
TCONS_00074095 mRNA downstream 288168 19340216 ~ 19366538 (-) True XLOC_037739
TCONS_00074102 mRNA upstream 23256 19681569 ~ 19762801 (-) False XLOC_037747
TCONS_00074103 mRNA upstream 24496 19682809 ~ 19699728 (-) True XLOC_037747
TCONS_00074109 mRNA upstream 418243 20076556 ~ 20372977 (-) True XLOC_037753
TCONS_00074110 mRNA upstream 1148021 20806334 ~ 20853439 (-) False XLOC_037758
TCONS_00074111 mRNA upstream 1165965 20824278 ~ 20853467 (-) True XLOC_037758
TCONS_00074096 other downstream 306467 19348124 ~ 19348239 (-) True XLOC_037740
TCONS_00074090 other downstream 625239 19029353 ~ 19029467 (-) True XLOC_037735
TCONS_00074078 other downstream 1280521 18322583 ~ 18374185 (-) True XLOC_037727
TCONS_00074071 other downstream 2237078 17415241 ~ 17417628 (-) False XLOC_037723
TCONS_00074065 other downstream 2830531 16823285 ~ 16824175 (-) True XLOC_037719
TCONS_00074104 other upstream 57269 19715582 ~ 19716857 (-) True XLOC_037748
TCONS_00074105 other upstream 92038 19750351 ~ 19756068 (-) False XLOC_037749
TCONS_00074106 other upstream 96132 19754445 ~ 19756102 (-) True XLOC_037749
TCONS_00074107 other upstream 202997 19861310 ~ 19863679 (-) True XLOC_037751
TCONS_00074108 other upstream 287321 19945634 ~ 19964772 (-) True XLOC_037752

Expression Profile

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