RNA id: TCONS_00074973


Basic Information

Item Value
RNA id TCONS_00074973
length 591
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id XLOC_037750
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 19771775 ~ 19773421 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tTTCAGGAGTGACAAAATTACCCCTACAACAGAAGAGAAGAGCCAAGATGAAGGGAGCTATTCACAGAGCTGGAGGAAACGCAGATTTTGGATCGTCCTCCACTCACTCTACCACTTTGTTTTTCCTTGTCAGACTTCATTTAAGGATAAGAAAGAAGCCTGCTACAAGAGAGACAGCGGAAGGGAGCCtcaaagacatttttatttgGATCTGCTAATCCTGAGGGGGCAGACGAAAGAACctgcattttccttcagcttaatatcagaggtcaccacaacgTAAGGAACTGGATAttactttggcatatgttttacacagcggatggccttccagctgcaacccagcactgtgaaacacccgtacactctcgTATTCACAGACACTTCTACACTATGTTcaagttcacctatagcacaagtgtttggactgtggtggaaacccacaccaaaacagggagaacatgtaaactccacacagaaatgccagcggacccagtcgggactcataccagcaacctttttgctgtgaggtgacagtctgccactgtgctgccccagtGTAGTTGTTAATAACCTCCAGATGTTTTa

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0048513 animal organ development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0006413 translational initiation biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0002949 tRNA threonylcarbamoyladenosine modification biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075333 lncRNA downstream 113462 19654706 ~ 19658313 (-) True XLOC_037746
TCONS_00074097 lncRNA downstream 300300 19468769 ~ 19471475 (-) True XLOC_037742
TCONS_00075332 lncRNA downstream 349903 19421246 ~ 19421872 (-) True XLOC_037741
TCONS_00074093 lncRNA downstream 679481 19087938 ~ 19092294 (-) True XLOC_037737
TCONS_00074089 lncRNA downstream 730748 19027152 ~ 19041027 (-) True XLOC_037734
TCONS_00075334 lncRNA upstream 83932 19857353 ~ 19864309 (-) False XLOC_037751
TCONS_00074974 lncRNA upstream 861316 20634737 ~ 20637010 (-) False XLOC_037754
TCONS_00074975 lncRNA upstream 861552 20634973 ~ 20636627 (-) True XLOC_037754
TCONS_00075335 lncRNA upstream 991129 20764550 ~ 20782512 (-) True XLOC_037755
TCONS_00075336 lncRNA upstream 1010622 20784043 ~ 20786653 (-) True XLOC_037756
TCONS_00074102 mRNA downstream 8974 19681569 ~ 19762801 (-) False XLOC_037747
TCONS_00074103 mRNA downstream 72047 19682809 ~ 19699728 (-) True XLOC_037747
TCONS_00074101 mRNA downstream 161339 19604867 ~ 19610436 (-) True XLOC_037745
TCONS_00074099 mRNA downstream 185927 19550367 ~ 19585848 (-) False XLOC_037744
TCONS_00074100 mRNA downstream 188071 19555136 ~ 19583704 (-) True XLOC_037744
TCONS_00074109 mRNA upstream 303135 20076556 ~ 20372977 (-) True XLOC_037753
TCONS_00074110 mRNA upstream 1032913 20806334 ~ 20853439 (-) False XLOC_037758
TCONS_00074111 mRNA upstream 1050857 20824278 ~ 20853467 (-) True XLOC_037758
TCONS_00074112 mRNA upstream 1257509 21030930 ~ 21067673 (-) False XLOC_037759
TCONS_00074113 mRNA upstream 1261467 21034888 ~ 21067971 (-) False XLOC_037759
TCONS_00074106 other downstream 15673 19754445 ~ 19756102 (-) True XLOC_037749
TCONS_00074105 other downstream 15707 19750351 ~ 19756068 (-) False XLOC_037749
TCONS_00074104 other downstream 54918 19715582 ~ 19716857 (-) True XLOC_037748
TCONS_00074096 other downstream 423536 19348124 ~ 19348239 (-) True XLOC_037740
TCONS_00074090 other downstream 742308 19029353 ~ 19029467 (-) True XLOC_037735
TCONS_00074107 other upstream 87889 19861310 ~ 19863679 (-) True XLOC_037751
TCONS_00074108 other upstream 172213 19945634 ~ 19964772 (-) True XLOC_037752
TCONS_00074116 other upstream 1430411 21203832 ~ 21205481 (-) False XLOC_037761
TCONS_00074117 other upstream 1430415 21203836 ~ 21205521 (-) False XLOC_037761
TCONS_00074118 other upstream 1430415 21203836 ~ 21205544 (-) False XLOC_037761

Expression Profile

//