RNA id: TU75190


Basic Information

Item Value
RNA id TU75190
length 3901
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G56155
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 36683640 ~ 36712643 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGTGCAGAGTAATTCATTGTCAAATAGCAGAAAACAATATAACAGCCACGCGCTACAAAGAGAACAGTGGTTTAAATAATGTACACCCACCTTCCCAACATCCCTCTCTTCTGACTCTCCGATCACGCGCGATACGTGACGACACGAGCAGAGCATACACACATCTCGTAGAAAACCAACATACGTAACGTTTGCATCGTTTTATCTTGAGCGtgaatctcacacacacaccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacacacactcgcatATACACGAAAGTGGGCGCCTCACCAATAAAATAAGTAATTTCCATGTGCTCTATTGCTTTAAGCTGACCCACCTGCCGTAAAAACATGCAGAGCAAGGAGCAAgtgaccccccccacccccaccgaCACTGCGTGCTTTTCTAAAATTACAGCGTTACAATGTGCGGAGCTTCATCTACACACTAGTTTTCATATAACAGACTACAAGAAAAACCTTCAGACTCAACTGTTCGTATGGAAGCCCATTCctgccaaataaaaaaaaataaaaaaaaaaaagacgcaaATGAAAAATTCTAGTTTTTCCATTTAAGTCACACTCATAAAATACAGAACTAAATCGCAATCGAAATTTTATTAACTGCACAAAttagttcaaggtgttttcacggttgttgatttgtttttaactgttttatttttttaaagttcaataaatgcaacaactttccaaaagtcaacgagTACTGGTGTCAATCGTGATTTCTATATCGACCAAAAATAATTGcgatcatgatttttttttcttcatgatcGAGCAGCTTTGATCCAAATTCTGAGTCAAGATTATCATGAAAAACTCAGACTTGGTTAGATACAAAGTCCCGATTTCAACTCGAGAAGTCAAAGCTATAAACGTAATAATGCGACACAGTTTTGACAAAATCTAAAATGTATTATGTCAAAATGATAAAAGtccattttatgtttttttatttaaattgtctttttattaactttttgtGCTAATtctgacctttttttcttttttgcatctTTTATCTCCTCGTTTCGGGGGGGGGGAAATGGGCTTCCATAGTTTTACCTCATGTGCCAGGaaacaggtttaaaaaaaaaaaaaaaaaaaaggtccaggCTACATTCACACAAACAGCATTTTGGAATTATTGTGGCggcaaaaaaatacatttcgcCATAAAAACTTCATTgacattcattttaaatgacaGCATTTTGGATATTGTGTTCACTGGAAGATGTTTAGCCCTGTGCTTCTAAATTTAAAAAGTCAGTCCACGCTAAATCTTGTTCACACTCCTATCCGACGAGTTGAATGCTTTGACTTTGCATGTTGCCGTGAGTTCAGCTGTACACGAGTCACATAACGGGTCCGTTCTGATTCATATAAAACAGGCCGAGTGGGTCAAACTGCTTTTAACAGATGCTAAGTCGACCAGAATTGGGTTAGATTGAGAcgacatttaaaaatatattttgctacgtttccccctctcattccccctgctctggtgtttccccctctcattccccctgctctggtgtttccctctcattccccctgccccgcccctaaaccggagacatttggaaactctTCTGACCGGTTTTGGTTTGGAGTCTGCAGAGTTGTGTTTCcgtctcaacggccgcaaacggagacctttggctaCACCGACGACAACGTTTCTCCGCCTGACCGGGTCACGACGTCTCGTTCTGAGACTTCGCTACAACTACCAGCAACAGGCGGAGtctccacgctgcctcctgtttatgcccagtatacgagaatgttgttgagatattttggtttaaaaacggAGATtgagttcttctactggagctaaaatcACTCGTGTGCACAGAGATCGCTTTTGGATCAAAACTCAAaacgcttaaaaaccaaaaacgcttaaaaaccaaaacgtagcgatgAAGATGTAGCCGAAGGGTTGCATGGAAAACAAATGGAATTGTTTCATGATGATTTAGGCTTTCCCACCCTGGTGAGACTACAAATTGGAGTTTGCAACATGTTCATGACATTAAAACAGACTGCAAAAAAATTATGGACGGAGCTTCTGGGTCCGAGAAATGAAGCCGACgctgaagctccttaaagctgcgttctctctaacttccagcaggggggagactccttaaagctgcattctctctaacttccagcaggggggagactccttaaagctgcattctctctaacttccagcaggggggagactccttaaagctgcattctctctaacttccagcaggggggagacaccttaaagctgcattctctctaacttccagcaggggggagactccttaaagctgcgttctctctaacttccagcaggggggagactccttaaagctgcattctctctaacttccagcaggggggagactccttaaagctgcgttctctctaacttccagcaggggactTCACcagctccaaaaagaagtctgagaaaatgagcctacttctctcTTGATTTATTTCCTCACTAAATATTTTCATAATTAGTTTTTATggatcgctagtttcaagtcctcttcatgatgttcatttagtaaatgatggtcccatttattttacaacagatgataaagcaggggatgtttTAGGACCTGTCAGTCAGGACTttccctttccctccctccccagCTCCGCCCTCTCGCCAAAACtcgaggcttcaaaacggcaCAAACCAACGGGTAACGGCACGGATGCTACGTCCACTAATATTAAAGTCTGTGCATTACAACTTTAAAATTGTAACACAGGTGTACTTTTCCAGTccaattaaaaacacaaatgaatgAGCTGTAGGCTCGACCGTACAGGAGCCGGATCAAACATCACGTAAGGTGCTAAAGGCATTTTTGAACAAAAGTGGGTCATTGTGAAAATGTAACAAGACTGTTACTTTGTTCCACAAAATGCATCACTCATATATTCACACTTTCCAAcgagcaaaattacgaatctaTCAAACTATAATTGTAAGTAACAAGACGTGACGGGGAAGACGAGCAGAAACATTCAGCTCACAGTCTTTGGTTAAGGTCAGAAGAGAAGCAGCACTTTGTAGAGGCGCCTCATTGTGAGCTCTTGTGGGAAACAACgaaaaaaacatttggacaGAATCCCTGAAGAGCATCAAGTGACCACTTAATGCAATGTTTGAGTTGAGAAGTCAACATAAAAAAGGGGAACACGTGAAGTGGATGTCCTGGTTTTTCGGGAAGGAGAAGAGCCCTCGGTAGGTCCGACTGGTGCTGGTTTATAGAGCAGGAATGTAATGGATGCTGGTATCAGGAGTGAAGACATCGCACTGCATCCActggtggaaaaaaacaaaaacaaacaagcaagtGGAGAGAATCCCAATCACTTTAAATCCCAGTTCAGTCTTCACGTGTGCGCAGGAAAGTAGAGAGGTACCCTCAGAAGCATCAGATAAAAGTGAAGACCTGCAGAAATGAAGGCAGCGGTTCCTGGAAAAAGCAAACGGATGAAATTGAGCCCCTTTATCATTTGTCCCGTATCACTCGGGTAACGCAGTTCTCCTTTCAGAGCCGAGGTTCCTCAGACAacgcaggattttttttttttttttttggacgaCTCTTTCAGGTTTCATGGTGGTGTTGTCGGCTAAAAAGCGGGTCCGAGTGAAGCTCATCTCTTCCCTGACTTCATGTAGGACGGTATCGCTCCCCGAGCGGTCAGGCCCTCGAAGCGCTTGTAGGTGTAGTTGATGAAGACCCAGTCCTTGTTCTTCAGGTCGGCCTCGGTCTGGTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75214 lncRNA downstream 9035 36657889 ~ 36699601 (-) True G56167
TU75191 lncRNA downstream 23354 36683640 ~ 36685282 (-) False G56155
TU75208 lncRNA downstream 92785 36614577 ~ 36615851 (-) True G56162
TU74361 lncRNA downstream 110364 36594225 ~ 36598272 (-) True G55662
TU74363 lncRNA downstream 112811 36593238 ~ 36595825 (-) True G55664
TU75237 lncRNA upstream 39802 36752445 ~ 36752701 (-) True G56190
TU75238 lncRNA upstream 40114 36752757 ~ 36753054 (-) True G56191
TU75242 lncRNA upstream 43570 36756213 ~ 36756471 (-) True G56195
TU75244 lncRNA upstream 45312 36757955 ~ 36758651 (-) True G56197
TU75266 lncRNA upstream 84800 36797443 ~ 36798196 (-) True G56215
XM_039801622.1 mRNA downstream 82667 36610137 ~ 36625969 (-) True lrif1
XM_039799296.1 mRNA downstream 101868 36599574 ~ 36606768 (-) False si:dkeyp-110g5.4
XM_039799297.1 mRNA downstream 102094 36599573 ~ 36606542 (-) False si:dkeyp-110g5.4
XM_039799298.1 mRNA downstream 102381 36599573 ~ 36606255 (-) True si:dkeyp-110g5.4
XM_039799312.1 mRNA downstream 119924 36581523 ~ 36588712 (-) True igf3
XM_039801554.1 mRNA upstream 10595 36723238 ~ 36744131 (-) True LOC120559655
XM_039800296.1 mRNA upstream 67658 36780301 ~ 36804670 (-) True stk35
XM_039800964.1 mRNA upstream 138207 36850850 ~ 36866302 (-) True gmeb2
XM_039799935.1 mRNA upstream 172160 36884803 ~ 36895540 (-) False rhoaa
XM_039799934.1 mRNA upstream 172160 36884803 ~ 36895498 (-) True rhoaa
XR_005639240.1 other downstream 148677 36559389 ~ 36559959 (-) False LOC120559361
XR_005639221.1 other downstream 809900 35887101 ~ 35898736 (-) False si:ch73-70k4.1
TU74116 other downstream 1298870 35404604 ~ 35409766 (-) True G55492
XR_005639224.1 other downstream 1430782 35269900 ~ 35277854 (-) False LOC120559165
XR_005639341.1 other upstream 13953 36726596 ~ 36744132 (-) False LOC120559655
TU75262 other upstream 172222 36884865 ~ 36895490 (-) False rhoaa
TU75263 other upstream 172222 36884865 ~ 36895490 (-) False rhoaa
TU75311 other upstream 276142 36988785 ~ 37001151 (-) False phc2a
TU75312 other upstream 276142 36988785 ~ 37001151 (-) False phc2a

Expression Profile