RNA id: TCONS_00074975


Basic Information

Item Value
RNA id TCONS_00074975
length 770
lncRNA type intronic
GC content 0.35
exon number 2
gene id XLOC_037754
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 20634737 ~ 20637010 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgtgggggttcagtttgctagcgctaacttagctaaagttagctcacctaagttatagcagcacattaaggatggatattaaatgcagaaacgtatgcaacagttaagtagtttgtgtttaacgtaagagaaagtataacttaaagtttgtgttttagagatttagtccataagttttttaatgctgcatagtgaataaattacagatttacaatttattttaacttaaattacatttactactgatgtttacagaaccatttaaactgtatgcacctcattctaaaatgcatgttcttggtctttagataccaaagtgattttgttacctgtggatcttcaaacttcacatccagagttgtgaggaatcagaggtgcatgcggctgcccacgggaaaaatttgccatcagcccaacacagtttggattatcataggactgtcagaggtttgccaaacctgtcaaatgcatgatggctcctgtttggacttaccgatgtcctcgacttcaagtttccatcaaaactgtatacatttgagatatattagagactctttgtgggactggacattatgcatcctaaatcttcatcaaaatatgcaaatctcctcactgagttgccttggatgatttctcaataggatctggtattattaatgtttttatttatgtattgtgtatgtgtagccacattaatggcctattttgtagtcactattaaaaggaacatcgattgatattgaatacatgttatggtctttaatccatc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075334 lncRNA downstream 770664 19857353 ~ 19864309 (-) False XLOC_037751
TCONS_00074973 lncRNA downstream 861552 19771775 ~ 19773421 (-) True XLOC_037750
TCONS_00075333 lncRNA downstream 976660 19654706 ~ 19658313 (-) True XLOC_037746
TCONS_00074097 lncRNA downstream 1163498 19468769 ~ 19471475 (-) True XLOC_037742
TCONS_00075332 lncRNA downstream 1213101 19421246 ~ 19421872 (-) True XLOC_037741
TCONS_00075335 lncRNA upstream 127923 20764550 ~ 20782512 (-) True XLOC_037755
TCONS_00075336 lncRNA upstream 147416 20784043 ~ 20786653 (-) True XLOC_037756
TCONS_00075337 lncRNA upstream 165870 20802497 ~ 20805121 (-) True XLOC_037757
TCONS_00074114 lncRNA upstream 421225 21057852 ~ 21067945 (-) True XLOC_037759
TCONS_00075338 lncRNA upstream 557979 21194606 ~ 21205554 (-) False XLOC_037761
TCONS_00074109 mRNA downstream 261996 20076556 ~ 20372977 (-) True XLOC_037753
TCONS_00074102 mRNA downstream 872172 19681569 ~ 19762801 (-) False XLOC_037747
TCONS_00074103 mRNA downstream 935245 19682809 ~ 19699728 (-) True XLOC_037747
TCONS_00074101 mRNA downstream 1024537 19604867 ~ 19610436 (-) True XLOC_037745
TCONS_00074100 mRNA downstream 1051269 19555136 ~ 19583704 (-) True XLOC_037744
TCONS_00074110 mRNA upstream 169707 20806334 ~ 20853439 (-) False XLOC_037758
TCONS_00074111 mRNA upstream 187651 20824278 ~ 20853467 (-) True XLOC_037758
TCONS_00074112 mRNA upstream 394303 21030930 ~ 21067673 (-) False XLOC_037759
TCONS_00074113 mRNA upstream 398261 21034888 ~ 21067971 (-) False XLOC_037759
TCONS_00074115 mRNA upstream 435732 21072359 ~ 21098413 (-) True XLOC_037760
TCONS_00074108 other downstream 670201 19945634 ~ 19964772 (-) True XLOC_037752
TCONS_00074107 other downstream 771294 19861310 ~ 19863679 (-) True XLOC_037751
TCONS_00074106 other downstream 878871 19754445 ~ 19756102 (-) True XLOC_037749
TCONS_00074105 other downstream 878905 19750351 ~ 19756068 (-) False XLOC_037749
TCONS_00074104 other downstream 918116 19715582 ~ 19716857 (-) True XLOC_037748
TCONS_00074116 other upstream 567205 21203832 ~ 21205481 (-) False XLOC_037761
TCONS_00074117 other upstream 567209 21203836 ~ 21205521 (-) False XLOC_037761
TCONS_00074118 other upstream 567209 21203836 ~ 21205544 (-) False XLOC_037761
TCONS_00074119 other upstream 567212 21203839 ~ 21205429 (-) True XLOC_037761
TCONS_00074136 other upstream 795918 21432545 ~ 21432661 (-) True XLOC_037767

Expression Profile

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