RNA id: XM_039800787.1


Basic Information

Item Value
RNA id XM_039800787.1
length 409
RNA type mRNA
GC content 0.56
exon number 4
gene id LOC120559227
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 37882168 ~ 37900343 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATGGTGGAGAGCAAGGCGTCCGTGACGTCACTGCGTTCACCCTGACGTAACTGACGTTGGACTTCTGGACTGCACACAAACCCGGCGCTGGGAAATTAGCAAGCCAGTTGAGCACGAAGTTTCAGCCAACACTGCGGTTTAATAAGGTCAGCATGGCTCTCACACAGGTCTCCTCCAACAAGTGCGCTGGCGGCTTCCAGAAGGTGTTCGAACACGAAAGCACTGAGCTCAGGTGTAAGATGAAGTTTGCGGTCTACCTGCCTCCCAAGGCCGAGACAGACAAATGTCCCGTCATGTACTGGCTCTCAGgtctgaCGTGTACGGAGCAGAACTTCATCACCAAAGCTGGCAGTCAGGTCCCAGCTGCAGAGCACGGCATCATCATCGTCGCTCCAGACACCAGCCCAC

Function

GO:

id name namespace
GO:0046294 formaldehyde catabolic process biological_process
GO:0018738 S-formylglutathione hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75601 lncRNA downstream 5670 37885795 ~ 37887015 (-) True G56432
TU75600 lncRNA downstream 9672 37882305 ~ 37883013 (-) True G56431
TU75592 lncRNA downstream 13153 37878916 ~ 37879532 (-) True G56428
TU75579 lncRNA downstream 24092 37824265 ~ 37868593 (-) False G56421
TU75578 lncRNA downstream 24092 37846809 ~ 37868593 (-) False G56421
TU75603 lncRNA upstream 17195 37917538 ~ 37979495 (-) True G56434
TU75604 lncRNA upstream 17616 37917959 ~ 37920839 (-) False G56435
TU75605 lncRNA upstream 17616 37917959 ~ 37921199 (-) True G56435
TU75606 lncRNA upstream 25851 37926194 ~ 37940548 (-) True G56436
TU75609 lncRNA upstream 25851 37926194 ~ 37940548 (-) False G56436
XM_039800328.1 mRNA downstream 563282 37297505 ~ 37329403 (-) True mthfr
XM_039800329.1 mRNA downstream 563767 37297505 ~ 37328918 (-) False mthfr
XM_039801458.1 mRNA downstream 638644 37220534 ~ 37254041 (-) True LOC120559612
XM_039801459.1 mRNA downstream 639121 37220534 ~ 37253564 (-) False LOC120559612
XM_039801460.1 mRNA downstream 639331 37220534 ~ 37253354 (-) False LOC120559612
XM_039800790.1 mRNA upstream 100165 38000508 ~ 38017411 (-) False LOC120559229
XM_039800476.1 mRNA upstream 174074 38074417 ~ 38077028 (-) True LOC120559054
XM_039800478.1 mRNA upstream 179538 38079881 ~ 38082216 (-) True LOC120559055
XM_039801587.1 mRNA upstream 183479 38083822 ~ 38118628 (-) True tfe3a
XM_039800479.1 mRNA upstream 232879 38133222 ~ 38188792 (-) True fgd1
TU75505 other downstream 205958 37685800 ~ 37686727 (-) False G56376
TU75491 other downstream 269704 37621924 ~ 37622981 (-) False G56376
TU75494 other downstream 269704 37621924 ~ 37622981 (-) False G56376
TU75503 other downstream 269704 37621924 ~ 37622981 (-) False G56376
TU75428 other downstream 519369 37372635 ~ 37373316 (-) True G56335
TU75608 other upstream 25851 37926194 ~ 37940548 (-) False G56436
TU75615 other upstream 172996 38073339 ~ 38169676 (-) False G56438
TU75613 other upstream 221117 38121460 ~ 38130144 (-) True G56438
TU75620 other upstream 239701 38140044 ~ 38167270 (-) True G56441
TU75723 other upstream 474300 38374643 ~ 38378423 (-) False G56504

Expression Profile