RNA id: TCONS_00074110


Basic Information

Item Value
RNA id TCONS_00074110
length 2656
RNA type mRNA
GC content 0.44
exon number 14
gene id XLOC_037758
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 20806334 ~ 20853467 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCACGATGTGTTGACCACAACCagtaaaaatcacattttaacaaTGGTCTATTTAAAAGCGGAAGGAGAGAGAGGACGTTGACAGTGGCTTCTGACTCTTTCGTCCGTGCATGGATTTGAGCTAACGCGGTTTTGTTTTTCCAGGAGATTGGACTGAATATCTGCATCATCTGAATCAGACAGCAAATTTGCACAATGGATCCCTTGGGAGCCCGTTCCCAGTTTGTGGAGGTTCTGAACCTGCCCACATGGGACCAGCCTCAGGGAGTCCAGGACGAGCTGGATGGAGAAAACCActatgaggaggaggaggaggaagaagaggacaACTTGACCAATCAGCTCAACTCTGTTAACTCACCGTTTACTTTCAGACAGGACATTAACAACAAGATTGTACTATTTAATGGAGACGTGGCACTTTTAAACTGCACAGCAATCGTCAACACAAGCAATGAGACACTAACAGACAAGAACCCCATATCAGACAGTATCCACAGACACGCTGGACCTGAACTAAGAGATGAACTACTTAAGCTGAAAGGATGTCGGACTGGTGAGGCAAAAATGACAGAGGGATTCGACTTGGCTGCACGATTTATAATTCACACCGTTGGACCCAAATATAAAGCCAAGTACCGGACAGCTGCAGAAAGTTCTCTATACAGCTGTTACAGAAACGTCTTGCAGCTTGCCAAGGAGCATGCCATGGTTTCTGTGGGCTTCTGTGTGATCAGCACAGTCAAAAGAGCGTATCCTGTTGAGGACGCCACTCATATAGCATTAAGAACTGTTCGCAGATTTCTGGAGAACCATGGCGAGAACATTGAGACGTTGGTGTTTGCTGTTTCGGATGTTGAGGAGCCAGTGTACAGGAAGTTATTGCCTTTGTATTACCCACGCTCAAAACAAGAGGAGAGAATCAGTCTGCCTCTCCTCCCTGCCGACATTGGCAATTCTGAGGGAGAGCCGGTGGTCCCGGAGAGACAGATCCGCATTGCTGAAAAGCCAGTCAATCTAGAGGATGACCCAGAGGATGATTCACTAGACTCGGATCTGGGACTGGTCGGAAGTCATGCCTTTGCTCGTATGGAAGGAGATGTGGATAAGCAACGGAAACTCATCCTTCAGGGGCAGATGTCTGAAGTAGCCCAGCAGAAACAACACCAAAGAAActATAACCGCTGGCTTTGCAAAGCTCGTGCAGAGGACCTCTCAGACATAGCAGCGTTGAAGGCATTATATCAGACCGGTGTCGATCTGTGCGGTAGGACAGTCATGGTTGTAGTTGGCAGGAATATTCCAGTGACGCTTATTGACATGGAGAAGGCTTTGCTGTATTTCATCCATGTGATGGACCACATAACAGTGAAGGAGTATGTGATGGTGTATTTCCACACGCTCACCGGTGAACACAACCACCTGGAcacagactttctcaagaagcTCTATGACATTGTGGACGCCAAGTTTAAGAAAAACCTGAGGGCTTTCTACTTCGTTCACCCAACGTTCCGCTCCAAGGTCTCTACATGGTTCTTCACTACATTCAGCGTATCAGGCCTTAAAGACAAAGTCCATCACATAGAAAACCTGCAGCAGCTCTTCACCTGCGTCCTGCCTGAACAGATCGACATCCCTCCTTTTGTCCTGGAGTACGACTCACGGGTTAACAGCCCTTATTACTCGGCTCAATCCGCAGGCCTATGATGCAGTCAAATAAACCCAGCATTGAAGAGCTGGACTGAGAAGACATTGAACTCGATGACCCCAAACTCAAGATGGACGCAATCAAAAGTGTGTCTCCGCCGTTCCTGGCCGGCTATGTTTTCTGAGACAGCGAAAGACTGTTGATCAATAATGCTGTATAAACACAAACTGCTGAAACATGCTGAATGTGCCACAGAACTGTACTAAACACAAGTGAAGGAGCCGCTGGCCTGACCCAAGCTTTTTTTttggaggtatgtgtgtgtgttgctgaatTTACCAACCAATATTTTGTACCAATGTGAAACACATGTACCAGTGTCTGTGTTAATAATGGCTGGGAATAGCAGAAAGGATTCTGGCTTTAATTTCTCATGTTCTAGTCCATCCAGTCATGTGAAAGAAATGTGCTTTCATTTCATCTCATGTTTGCACAGTCACCAGAAGGAGcagcatttgtttttatcttcattctctctctttttttcaagCACTTTTACAGCTTTAAGGTATTAAACATCACTACTGTTTCTTGATTTTTGTCTTTGAGCATACAAGCAATGAAATATAGTTCAGGTTGGCCTGATGAGATTTCTTTTGCCATATTAAtatcatcattttttttctgtttcttacAATATGGCCATCAGTGTTGCATTGGATTCTCCTGAAGTACACTAAACTCCTAGTTGGTCTTTTATTCGGTGAAGCAGACTTGCATTCATGGCCTGGCGCAGACAGAGTTTATTCACTGTAAATAGACGTTTGTTGATACTACATATGCAGTCTGTTACTATTCATTCTGGTTCATTTTAGTCAGCCTTTACTGTAGCGATGAAGTGatttatgtgttgaatttcatactgttttaaatgaattatgaTGTATGGATTATGATTATGAAGAGAGTACTATtgaataaaaacagaatttgatGTTATGGGT

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-31 Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 27. Orthologous to human GDAP2 (ganglioside induced differentiation associated protein 2).

Ensembl:

ensembl_id ENSDART00000028247

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075337 lncRNA downstream 1213 20802497 ~ 20805121 (-) True XLOC_037757
TCONS_00075336 lncRNA downstream 19681 20784043 ~ 20786653 (-) True XLOC_037756
TCONS_00075335 lncRNA downstream 23822 20764550 ~ 20782512 (-) True XLOC_037755
TCONS_00074974 lncRNA downstream 169324 20634737 ~ 20637010 (-) False XLOC_037754
TCONS_00074975 lncRNA downstream 169707 20634973 ~ 20636627 (-) True XLOC_037754
TCONS_00074114 lncRNA upstream 204413 21057852 ~ 21067945 (-) True XLOC_037759
TCONS_00075338 lncRNA upstream 341167 21194606 ~ 21205554 (-) False XLOC_037761
TCONS_00075339 lncRNA upstream 342982 21196421 ~ 21205554 (-) False XLOC_037761
TCONS_00075340 lncRNA upstream 348924 21202363 ~ 21205499 (-) False XLOC_037761
TCONS_00074976 lncRNA upstream 349109 21202548 ~ 21205542 (-) False XLOC_037761
TCONS_00074109 mRNA downstream 433357 20076556 ~ 20372977 (-) True XLOC_037753
TCONS_00074102 mRNA downstream 1043533 19681569 ~ 19762801 (-) False XLOC_037747
TCONS_00074103 mRNA downstream 1106606 19682809 ~ 19699728 (-) True XLOC_037747
TCONS_00074101 mRNA downstream 1195898 19604867 ~ 19610436 (-) True XLOC_037745
TCONS_00074099 mRNA downstream 1220486 19550367 ~ 19585848 (-) False XLOC_037744
TCONS_00074112 mRNA upstream 177491 21030930 ~ 21067673 (-) False XLOC_037759
TCONS_00074113 mRNA upstream 181449 21034888 ~ 21067971 (-) False XLOC_037759
TCONS_00074115 mRNA upstream 218920 21072359 ~ 21098413 (-) True XLOC_037760
TCONS_00074120 mRNA upstream 368989 21222428 ~ 21231297 (-) False XLOC_037762
TCONS_00074121 mRNA upstream 371101 21224540 ~ 21231021 (-) False XLOC_037762
TCONS_00074108 other downstream 841562 19945634 ~ 19964772 (-) True XLOC_037752
TCONS_00074107 other downstream 942655 19861310 ~ 19863679 (-) True XLOC_037751
TCONS_00074106 other downstream 1050232 19754445 ~ 19756102 (-) True XLOC_037749
TCONS_00074105 other downstream 1050266 19750351 ~ 19756068 (-) False XLOC_037749
TCONS_00074104 other downstream 1089477 19715582 ~ 19716857 (-) True XLOC_037748
TCONS_00074116 other upstream 350393 21203832 ~ 21205481 (-) False XLOC_037761
TCONS_00074117 other upstream 350397 21203836 ~ 21205521 (-) False XLOC_037761
TCONS_00074118 other upstream 350397 21203836 ~ 21205544 (-) False XLOC_037761
TCONS_00074119 other upstream 350400 21203839 ~ 21205429 (-) True XLOC_037761
TCONS_00074136 other upstream 579106 21432545 ~ 21432661 (-) True XLOC_037767

Expression Profile

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