RNA id: TU75616


Basic Information

Item Value
RNA id TU75616
length 1634
lncRNA type read_through
GC content 0.41
exon number 4
gene id G56438
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 38073339 ~ 38169676 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tccaaggtccaaacgcgcctggcttttaaagggaatgggagatgatctctgattggttgatgaatgggagatgatctctgattggttgattacatgttacgcccaaaacacacctctgattaatgaagacactaaggacaaccctttaggaccaggcgcccggcacacaggACACTTTTTACCgccatcaaactagcaaaagtgtatttggacacgccctaaacacacctgcacattCAGACACTAAAATGTTATGtttcagacggacacatcaggagaaaattaactttgttCCAGACCTTTTTCTGTCTCAGGAACCgaactctcgcgagatctggcaacaagGACAACTTTGCTGTTGGGCGAAAACCTTGTATGTTCACCGTTACAACCGTTGcttgaaaaaaatgcaaattagaaaacattttattgagctttaatgctaaatatgtcttttggctgtgtaaatatctaaagttagcaaaagaaaatattaactaGCCTATACCAATGTAACTTTTCATCCACCCACACAAcgttcacaacacaaacaaggccacgcccctttaggagGCAGGAAGTGAGGACCCTTTCATACCGTTGGCGCTGCTTGTAATGCGCTCTCTTTAGCTACAGAGGATCTTTgatgaaacaaacaacaaatgatgttaataaatgtctaaacatcgccaaatatacagtattatatAAAGCTGATGATACGGAGCTCTTTAACCCacctgttgtccttgggtcaaattagAATAGAATTGGAAGaataaataacgtggatggttccataaaacgctcttcacaagtaaaatatatgatcagttcactactttttattgaatttgggtgttttataaaattttatagcatttgaaaaacaaatgtatgaAAGAAACGcagcaaaaaaaagcaaaaacatcggaaaaaccgacaaaaacatctgaaaaactgacaaaaacatcggaaaaaccaacaaaaacattggaaaaactgacaaaaacatcggaaaaactGACAACAACATTGGGAATAGCGacaagttttcattttaaattttgacccagaaaatcTAAAAGTTGcgtggtcgacaggaagacgaCAGATGATGTTAATAAATGTCTGAACAGCAacaaatatatgaaataaagCTGATTTATGACACGTAGCTCtttaacaaccaatcagaggaggTGACCGGAATGCTTATCTAACTGACACGTTGCTACAGCAACCGCCAGGTTCCTGGAACAACGTGTCAACACACGGGCTGCCCAGTCCTGATTCCACAATGTTACCTTGGTAACAACAGGACTAGTTACCATGACAACATCCACcatcatctctctctcgctctctcgctctctctctctcttactgtctgtttctctgtctctctctctctgtctgtctgtctctttctctctctgtctgtctgtctctctctctctgtctgtctgtctctgtctctctgtctgtctctttctgtctgtctgtctttctctgtgtctctctctctgtctctctctctccctgtctctctctctgtctctgtctgtctgtctgtctctctctgtctgtctgtctctctctgtctctctctctctctgtctgtctccctgtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75674 lncRNA downstream 364 38072615 ~ 38073220 (-) True G56482
TU75671 lncRNA downstream 4730 38065723 ~ 38068854 (-) True G56479
TU75664 lncRNA downstream 9834 38059909 ~ 38063750 (-) True G56475
TU75656 lncRNA downstream 16806 38026746 ~ 38056778 (-) True G56468
TU75683 lncRNA upstream 2116 38171792 ~ 38187904 (-) False G56488
TU75682 lncRNA upstream 7699 38177375 ~ 38187770 (-) True G56488
TU75686 lncRNA upstream 13161 38182837 ~ 38184233 (-) True G56490
TU75691 lncRNA upstream 24099 38193775 ~ 38484784 (-) True G56495
TU75697 lncRNA upstream 72056 38241732 ~ 38242674 (-) True G56501
XM_039800790.1 mRNA downstream 56173 38000508 ~ 38017411 (-) False LOC120559229
XM_039800787.1 mRNA downstream 173241 37892685 ~ 37900343 (-) False LOC120559227
XM_039800328.1 mRNA downstream 744181 37297505 ~ 37329403 (-) True mthfr
XM_039800329.1 mRNA downstream 744666 37297505 ~ 37328918 (-) False mthfr
XM_039801460.1 mRNA downstream 820230 37220534 ~ 37253354 (-) False LOC120559612
XM_039801825.1 mRNA upstream 23584 38193260 ~ 38206091 (-) True LOC120559803
XM_039800480.1 mRNA upstream 159590 38329266 ~ 38336906 (-) True LOC120559058
XM_039800481.1 mRNA upstream 173811 38343487 ~ 38352553 (-) True LOC120559059
XM_039799719.1 mRNA upstream 338816 38508492 ~ 38531063 (-) True pcsk1nl
XM_039799720.1 mRNA upstream 368997 38538673 ~ 38567635 (-) True LOC120558637
TU75608 other downstream 133036 37926194 ~ 37940548 (-) False G56436
TU75596 other downstream 173289 37882168 ~ 37900295 (-) True LOC120559227
TU75505 other downstream 386857 37685800 ~ 37686727 (-) False G56376
TU75494 other downstream 450603 37621924 ~ 37622981 (-) False G56376
TU75723 other upstream 204967 38374643 ~ 38378423 (-) False G56504
TU75729 other upstream 204967 38374643 ~ 38378423 (-) False G56504
TU75783 other upstream 235584 38405260 ~ 38406187 (-) True G56539
TU75784 other upstream 249606 38419282 ~ 38419860 (-) True G56540
TU75785 other upstream 249606 38419282 ~ 38513859 (-) False G56540

Expression Profile