RNA id: TU75646


Basic Information

Item Value
RNA id TU75646
length 1266
lncRNA type sense_over
GC content 0.45
exon number 11
gene id LOC120559229
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 38000002 ~ 38046669 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCTCCAGCTGCATTAGAGCAGGTCTCTGCTGTGTGTAGTGTAATCTCTACATGGTTGTCttctttttgtttccagatGGTGTTCCTGTTTTGGATTTGTCGTCTATCTTCCTCCCAAATCTGAGTGAGATGTCTTCAGTCCATAGAAACTGTGATCCTGCCGTATACAATGatgttaagaaaacatttgacaGTTGCACCATTGCTGATACTTGTGCTGAGTGTCTTCAGAGGACATACCCTCACATGCCATCCAACAGAGTATGAGAACAGGGATCAGTGCTGTCCTAGGTGTTCTGCTGGAAGTCGAGTTAGAAAACATTGCACAAAGTTCAGACCTACTTCCTGTCTGGATTCGCAGCGAGGGAACTTTCATGGATCGTCCTACAGGGTTTACAGAATGTTTTCCCTGTTCACGCTGTGATTCAGGTTCTGGTTTAAAGCTGAAGACCGCCATGTACGACTACCTCAGATACAGTTTGTGAACCACTGGAGGGATTCTACTGTAGGCACGCTGTAGAGGACAACTGTGTGGTATCACAGAAACACAGCAGCTGTCAACCAGGACAATATATCAGCCAAAAAGGAACAGCATTAAGGGACACTGAGTGCTCTGACTGCAGAGATGGAACATTTTCTGATGGGACATTATTGACATCGtgtcagccacacacacaGAACAGCATTAAGGGACACTGAGTGCTCTGACTGCAGAGATGGAACATTTTCTGATGGGACATTATTGACATCGtgtcagccacacacacaATGCTGAATGTGGAGAACAAAGTTCAGGAGCTGTGATCGGCGCCGTTGTGGGGGGGCTTGTGACCTGTTTAGTGGTCGGACTCGcaatagctctgtttttggtgtggcgtctcaaaaagaagaaagacacAGGAGGAGAAGGAAATGCAGACAATCCCGAACAGAACTCCATAAACAGTAAACATCcacatgaagaagaagaagaagaagaagaagaagaagaagaagaagaagagctgGGTGGGAGTGTGAAAATTGAACACAGAGACAGTTCATCGGACACTGCAGAGGAAAGTTCCAGGTTCAATGGTTGCTGACACATTAGACCACAGAGGCTCCTCACTTCTCTTCTGATCAGCTGCTCAACTCACAACTCACAAAGTAGCCATACACAGAAACTGTTGCTGCTTGTGTGAAAATGTTGCACTACTGAACTAAAATATTGAAACAAACACTGaactataaaatataatgaagtCTGTTGAAATGTATGTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75603 lncRNA downstream 20507 37917538 ~ 37979495 (-) True G56434
TU75634 lncRNA downstream 46925 37952220 ~ 37953077 (-) True G56453
TU75636 lncRNA downstream 46925 37952220 ~ 37953077 (-) False G56453
TU75606 lncRNA downstream 59454 37926194 ~ 37940548 (-) True G56436
TU75609 lncRNA downstream 59454 37926194 ~ 37940548 (-) False G56436
XR_005639233.1 lncRNA upstream 19386 38053575 ~ 38054241 (-) True LOC120559231
TU75664 lncRNA upstream 25720 38059909 ~ 38063750 (-) True G56475
TU75671 lncRNA upstream 31534 38065723 ~ 38068854 (-) True G56479
TU75674 lncRNA upstream 38426 38072615 ~ 38073220 (-) True G56482
TU75616 lncRNA upstream 39395 38073584 ~ 38169676 (-) False G56438
XM_039800787.1 mRNA downstream 99659 37892685 ~ 37900343 (-) False LOC120559227
XM_039800328.1 mRNA downstream 670599 37297505 ~ 37329403 (-) True mthfr
XM_039800329.1 mRNA downstream 671084 37297505 ~ 37328918 (-) False mthfr
XM_039801459.1 mRNA downstream 746438 37220534 ~ 37253564 (-) False LOC120559612
XM_039800476.1 mRNA upstream 40228 38074417 ~ 38077028 (-) True LOC120559054
XM_039800478.1 mRNA upstream 45692 38079881 ~ 38082216 (-) True LOC120559055
XM_039801587.1 mRNA upstream 49633 38083822 ~ 38118628 (-) True tfe3a
XM_039800479.1 mRNA upstream 99033 38133222 ~ 38188792 (-) True fgd1
XM_039801825.1 mRNA upstream 159071 38193260 ~ 38206091 (-) True LOC120559803
TU75608 other downstream 59454 37926194 ~ 37940548 (-) False G56436
TU75596 other downstream 99707 37882168 ~ 37900295 (-) True LOC120559227
TU75505 other downstream 313275 37685800 ~ 37686727 (-) False G56376
TU75494 other downstream 377021 37621924 ~ 37622981 (-) False G56376
TU75615 other upstream 39150 38073339 ~ 38169676 (-) False G56438
TU75613 other upstream 87271 38121460 ~ 38130144 (-) True G56438
TU75620 other upstream 105855 38140044 ~ 38167270 (-) True G56441
TU75723 other upstream 340454 38374643 ~ 38378423 (-) False G56504
TU75729 other upstream 340454 38374643 ~ 38378423 (-) False G56504

Expression Profile