RNA id: TU75648


Basic Information

Item Value
RNA id TU75648
length 451
lncRNA type sense_over
GC content 0.41
exon number 4
gene id LOC120559229
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 38000002 ~ 38046669 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gatgtattaagagaacgagtgggattcgtaattttgcttccAGGGTACACATATTAATGTATTAAGACTGCTTATTAGTGTGAAAGGGTTTTTGGCAGCTTGCCAAAGGCTGAGGTAAGAGAACAGGAAGGAGGACGTATTTGAAAAACAATAACGGAAAACCAATAAACGAGGACATATTGAACCACTAATGAAACACAGatGGTGTTCCTGTTTTGGATTTGTCGTCTATCTTCCTCCCAAATCTGAGTGAGATGTCTTCAGTCCATAGAAACTGTGATCCTGCCGTATACAATGatgttaagaaaacatttgacaGTTGCACCATTGCTGATACTTGTGCTGAGTGTCTTCAGAGGACATACCCTCACATGTAATCCAACAGAGTATCTGAACGGGGATCAGTGCTGTCCTACGTGTCCTGCTGGTAAGATCTGATTGAATGTGCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75647 lncRNA downstream 2020 38000002 ~ 38001981 (-) False LOC120559229
TU75603 lncRNA downstream 24506 37917538 ~ 37979495 (-) True G56434
TU75634 lncRNA downstream 50924 37952220 ~ 37953077 (-) True G56453
TU75636 lncRNA downstream 50924 37952220 ~ 37953077 (-) False G56453
TU75606 lncRNA downstream 63453 37926194 ~ 37940548 (-) True G56436
XR_005639233.1 lncRNA upstream 6906 38053575 ~ 38054241 (-) True LOC120559231
TU75664 lncRNA upstream 13240 38059909 ~ 38063750 (-) True G56475
TU75671 lncRNA upstream 19054 38065723 ~ 38068854 (-) True G56479
TU75674 lncRNA upstream 25946 38072615 ~ 38073220 (-) True G56482
TU75616 lncRNA upstream 26915 38073584 ~ 38169676 (-) False G56438
XM_039800787.1 mRNA downstream 103658 37892685 ~ 37900343 (-) False LOC120559227
XM_039800328.1 mRNA downstream 674598 37297505 ~ 37329403 (-) True mthfr
XM_039800329.1 mRNA downstream 675083 37297505 ~ 37328918 (-) False mthfr
XM_039801459.1 mRNA downstream 750437 37220534 ~ 37253564 (-) False LOC120559612
XM_039800476.1 mRNA upstream 27748 38074417 ~ 38077028 (-) True LOC120559054
XM_039800478.1 mRNA upstream 33212 38079881 ~ 38082216 (-) True LOC120559055
XM_039801587.1 mRNA upstream 37153 38083822 ~ 38118628 (-) True tfe3a
XM_039800479.1 mRNA upstream 86553 38133222 ~ 38188792 (-) True fgd1
XM_039801825.1 mRNA upstream 146591 38193260 ~ 38206091 (-) True LOC120559803
TU75608 other downstream 63453 37926194 ~ 37940548 (-) False G56436
TU75596 other downstream 103706 37882168 ~ 37900295 (-) True LOC120559227
TU75505 other downstream 317274 37685800 ~ 37686727 (-) False G56376
TU75494 other downstream 381020 37621924 ~ 37622981 (-) False G56376
TU75615 other upstream 26670 38073339 ~ 38169676 (-) False G56438
TU75613 other upstream 74791 38121460 ~ 38130144 (-) True G56438
TU75620 other upstream 93375 38140044 ~ 38167270 (-) True G56441
TU75723 other upstream 327974 38374643 ~ 38378423 (-) False G56504
TU75729 other upstream 327974 38374643 ~ 38378423 (-) False G56504

Expression Profile