RNA id: XR_005639086.1



Basic Information


Item Value
RNA id XR_005639086.1
length 378
lncRNA type inter_gene
GC content 0.50
exon number 4
gene id LOC120558304
representative False

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 38315280 ~ 38323039 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGtgtccagcccctcccctcacGTAAGCTGTGAACTCTGCGTCAGATCTTCACTGCATGGACGAGAGCAGGCTGGAGTCATGGATCAGGGAGAGATGGAAGAAGATTTGACAACCATTCATGGTCACCGTGACAGCCCTTTAAATTCTTCAGGAAATGGACCAGAGCTCTTCTGACTCTACAGTGATCCTTGAACTAAGTTCCGTCCCTGAAAAGGAGGACATAAGTGTTCCTGAACTCAAGAGAGCAGAAAGTGTATTTGTTCATCAACAATGGCGAGAAAGAAGTGGAGCACCGAGGAGGTCCAGGCTGTGGAGAGCAATCTCATGGACAACATCAACTCTGGCAGGGTTCCTGGTAAAGCCCAGTGTGAAGCATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU75749 lncRNA downstream 8240 38303666 ~ 38307046 (-) True G56516
TU75743 lncRNA downstream 39666 38275329 ~ 38275620 (-) True G56513
TU75697 lncRNA downstream 72612 38241732 ~ 38242674 (-) True G56501
TU75683 lncRNA downstream 127382 38171792 ~ 38187904 (-) False G56488
TU75682 lncRNA downstream 127516 38177375 ~ 38187770 (-) True G56488
TU75738 lncRNA upstream 4325 38327317 ~ 38328091 (-) True G56509
TU75739 lncRNA upstream 4594 38327586 ~ 38328091 (-) False G56509
TU75717 lncRNA upstream 9139 38332131 ~ 38378423 (-) False G56504
TU75718 lncRNA upstream 9139 38332131 ~ 38378423 (-) False G56504
TU75758 lncRNA upstream 11382 38334374 ~ 38334803 (-) True G56522
XM_039801825.1 mRNA downstream 109195 38193260 ~ 38206091 (-) True LOC120559803
XM_039800479.1 mRNA downstream 126494 38133222 ~ 38188792 (-) True fgd1
XM_039801587.1 mRNA downstream 196658 38083822 ~ 38118628 (-) True tfe3a
XM_039800478.1 mRNA downstream 233070 38079881 ~ 38082216 (-) True LOC120559055
XM_039800476.1 mRNA downstream 238258 38074417 ~ 38077028 (-) True LOC120559054
XM_039800480.1 mRNA upstream 6274 38329266 ~ 38336906 (-) True LOC120559058
XM_039800481.1 mRNA upstream 20495 38343487 ~ 38352553 (-) True LOC120559059
XM_039799719.1 mRNA upstream 185500 38508492 ~ 38531063 (-) True pcsk1nl
XM_039799720.1 mRNA upstream 215681 38538673 ~ 38567635 (-) True LOC120558637
XM_039799997.1 mRNA upstream 590728 38913720 ~ 38916360 (-) True LOC120558769
TU75615 other downstream 145610 38073339 ~ 38169676 (-) False G56438
TU75620 other downstream 148016 38140044 ~ 38167270 (-) True G56441
TU75613 other downstream 185142 38121460 ~ 38130144 (-) True G56438
TU75608 other downstream 374738 37926194 ~ 37940548 (-) False G56436
TU75596 other downstream 414991 37882168 ~ 37900295 (-) True LOC120559227
TU75723 other upstream 51651 38374643 ~ 38378423 (-) False G56504
TU75729 other upstream 51651 38374643 ~ 38378423 (-) False G56504
TU75783 other upstream 82268 38405260 ~ 38406187 (-) True G56539
TU75784 other upstream 96290 38419282 ~ 38419860 (-) True G56540
TU75785 other upstream 96290 38419282 ~ 38513859 (-) False G56540

Expression Profile