RNA id: TU75847


Basic Information

Item Value
RNA id TU75847
length 1220
lncRNA type inter_gene
GC content 0.61
exon number 2
gene id G56579
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 38621818 ~ 38623939 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCAGTGAACTAAAACTTTATTTAGATATCAATAAACAGATTCCTGCTCAATAGTCCTCTccgtcatcctcctcctctcccacgCTGTCGGCTCCGACCTCTTCGTAATCCTTCTCCAGCGCCGCCATGTCTTCCCGGGCCTCCGAGAACTCGCCCTCCTCCATCCCCTCGCCGACGTACCAGTGGACGAAGGCCCGCTTGGCGTACATCAGGTCGAACTTGTGGTCGAGGCGAGCCCAGGCCTCGGCGATGGCCGTGGTGTTGCTCAGCATGCACACGGCCCTCTGCACCTTGGCCAGGTCGCCCCCGGGAACCACCGTGGGCGGCTGGTAGTTGATGCCCACCTTGAAACCGGTGGGGCACCAGTCCACAAACTGGATGGAGCGCTTGGTCTTGATGGTGGCGATGGCGGCGTTCACGTCCTTTGGCACCACGTCTCCGCGATACAAGAGGCAGCAGGCCATGTACTTGCCGTGGCGAGGGTCGCATTTCACCAGCTGGTTGGCCGGCTCGAAGCAGGCGTTGGTGATTTCGGACACCGAGAGCTGCTCGTGGTAAGCCTTCTCGGCCGAGATGACCGGCGCGTAGGTGGCCAGGGGGAAGTGGATGCGAGGGTAGGGCACCAAGTTGGTCTGGAACTCCGTCAGGTCCACGTTGAGGGCGCCGTCGAAACGAAGGGAGGCGGTGACCGAGGACACGATCTGGCTGATGAGCCGGTTCAGGTTGGTGTAAGACGGGCGCTCGATGTCCAGGTTCCTGCGGCAGATGTCGTAGATGGCCTCGTTGTCCACCATGAAGGAACAGTCCGAGTGCTCCAGCGTGGTGTGGGTGGTCAGGATGGCGTTGTACGGCTCCACCACGGCCGTGGACACCTGGGGGGCCGGGTAGACCGAGAACTCCAGCTTGGACTTCTTGCCGTAGTCCACGGACAGACGCTCCATCAGCAGGGAGGTGAAACCGGAGCCGGTGCCGCCGCCGAAGCTGTGGAAAACCAGGAAGCCCTGGAGGCCGGTGCACTGGTCCGCCTGGGGACAGAGACAGTTTGCGGATCCGGTCTAGCACCATGTCGATGATCTCTTTGCCGATGGTGTAGTGGCCGCGGGCGTAGTTGTTGGCGGCGTCCTCTTTGCCGGTGATCAGCTGCTCGGGGTGGAACAGCTGGCGGTAAGTCCCGGTGCGCACCTCATCTGGTGACAGATCACAAGTCACTTAATGGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75838 lncRNA downstream 16839 38603047 ~ 38604979 (-) True G56575
TU75689 lncRNA downstream 87575 38533986 ~ 38534243 (-) True G56493
TU75824 lncRNA downstream 90061 38531252 ~ 38531757 (-) False G56564
TU75821 lncRNA downstream 117530 38503603 ~ 38504288 (-) True G56563
TU75792 lncRNA downstream 121107 38499916 ~ 38500711 (-) False G56544
TU75864 lncRNA upstream 31036 38654975 ~ 38657609 (-) True G56593
TU75924 lncRNA upstream 49140 38673079 ~ 38673367 (-) True G56631
TU75911 lncRNA upstream 55861 38679800 ~ 38692379 (-) True G56618
TU75905 lncRNA upstream 66873 38690812 ~ 38693629 (-) True G56612
TU75919 lncRNA upstream 170322 38794261 ~ 38856694 (-) True G56626
XM_039799720.1 mRNA downstream 54183 38538673 ~ 38567635 (-) True LOC120558637
XM_039799719.1 mRNA downstream 90755 38508492 ~ 38531063 (-) True pcsk1nl
XM_039800481.1 mRNA downstream 269265 38343487 ~ 38352553 (-) True LOC120559059
XM_039800480.1 mRNA downstream 284912 38329266 ~ 38336906 (-) True LOC120559058
XM_039801825.1 mRNA downstream 415727 38193260 ~ 38206091 (-) True LOC120559803
XM_039799997.1 mRNA upstream 289781 38913720 ~ 38916360 (-) True LOC120558769
XM_039800156.1 mRNA upstream 709323 39333262 ~ 39348187 (-) True LOC120558856
XM_039799446.1 mRNA upstream 842287 39466226 ~ 39628477 (-) True plxna3
XM_039799936.1 mRNA upstream 1416046 40039985 ~ 40132853 (-) True gripap1
XM_039799937.1 mRNA upstream 1416046 40039985 ~ 40132852 (-) False gripap1
TU75822 other downstream 90061 38531252 ~ 38531757 (-) True G56564
TU75785 other downstream 107959 38419282 ~ 38513859 (-) False G56540
TU75859 other upstream 18415 38642354 ~ 38645449 (-) True G56590
TU75889 other upstream 171033 38794972 ~ 38805188 (-) False G56600
TU75890 other upstream 180212 38804151 ~ 38805188 (-) True G56600
TU75943 other upstream 278545 38902484 ~ 38902968 (-) True G56645
XR_005639179.1 other upstream 289781 38913720 ~ 38916360 (-) False LOC120558769

Expression Profile