RNA id: TU75886


Basic Information

Item Value
RNA id TU75886
length 4568
RNA type TUCP
GC content 0.42
exon number 5
gene id G56599
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 39237644 ~ 39242738 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttctttttttttttcccctccccccccccccccacacaagtGAAAACTAGAGCCgagcaattaatcgaaatgtaaatcgcgattatgatttcggctcccaaagatcacaaaaatagaataatcaagaaaaacaattatttagctcattacgttctgcaaagtaaactcttattttctcttggtgttctgaatgaaaaaataaaagtttaaaataggaaaagtattacagCAAATtttacagttgtgttttttttttgttgttgttgatttatttaacattttcccactgttttttttttaaacttcaacaattgcaaacatctttccagaagtcaacgagtaatcgtgttgaATTATCgcgatttcaatattgaccgaaataatcgtgattataatTTATTCCATAAACGAGTAGAGCAGCCCTAGCGAAAACCAGAACCTAATCGTGTGTAGAATCGACAgcgcagccccccccccctctgcgtCTATGTCGTAGCATGACATCACCTCtccaaaaatgtaactacacgtctcAGTGACGCGCCGTGgcgtggtagcgttgcatttcccccccagACTCATCTCATCGGTGGagaatagagagccgaagtcccgcccttctacttccggtccatgggaccttaattcggaaaaaatatgaatgagagtcaatggagagataataataattatgttttgatcctgtttgaattgagccgtggattacaaatatgatgttcgtcaatttaaaacataatttttcaaccgaagaaagtctccgtttattgttaaactgttgaagtatcagactgtgaaaataagtaattagaaagactacaaacttcatggatgacgtctggctgaagctacgatgtctgtgtgtatcgtaccaggatgtaacgttactctaacgAGCAGAAGATCTCGCTCGTTCTTTGgcttctctgctgaaaacacttgactggataaaacacagcaggtacgataacgttacatgtgttgtggaacagagctaagctagctagctagcgagcaagctgAGCACCAAGCTAGGTGAcgtagattgtgtgagacgggagatgtagtccactgggagatgtagtccactgggagatgtagtccactgagctGTTTctcacaaaactaagtggtcatatgacagacctacggctaactgagactttcttcggttgaaaaattatcttttaaattgacgaacatcatatgtgtaatccaCGGCTCGATTCAAAACGGGATCAAAGAATAATTTGCTTCTCGCCGTTCACTAcggttcatattttttctgagttaaggtcccatgaggtccaccggaaggggcgggacttcggctctctatactCGTCGTATGATTTGAATGTTCCGTCAATCAAGAACAGACGCTTTTGACttcttttaaaattttttttgataattttgttgatttttttttgtatttttaggcTTGTTGGCAGAGAGGTTTGTCGAtgcttttaaatttaaaaaaataaaaaaatgttttttctctctctctttctttgtataaggggccagtaaaaatgtactCAGGGCAACTAGAACTGGTTTTTTAGtgaaaaaaccccaaaaacccTCAACGTAGAGCCCCGATCGGTGGTGCCGTTTGTCCCGAAGCTTTTCCTGTCCGCGTGAAGCTGcagtttgcccccccccccccgttgcTCCGACACAATCCTATGGCTTCTGTACAGATGAGAAGAAAAAAGGCACCGGACGCAAACGTCTCAGCGTGGACGCCGACAGGAAGCACGAGCCAGACCCGTAGACCTAGATCTAGACCTGGATCTAGATCTAGACCTAGATCTAGATCTAGATCTAGATCTCTGGTTCTCAAGCTCCTCTGAATAATGTTCCCCCTCTCAACAGTGGTTTTTGAAGCCATGTGTAAGCCCCTAACCAGCACGAATGATgtgggagaaaaagaagaaagtctctataaagagatcgctgtcagcgatagatttactgaactacagccttggacctggaaaatGTTTAGATGGTGatgagaaaaggagacaaaaacttggagAAAGACGGTAGAACGGAGGagggaaggcaagaataggtcgaaaataataacaaaaacttggaaaaaatagaCAGCAGAAAGATGGAAGGCTACAATAGGGCGACAAAAAGggacaaactttgaaaaatgtgacaaaaacttcgaaaaaaagcagaaagacacacccacaccctctcacacacacacactctttaacacacacacactaactcacagactcacactctcagatacacacacacacactgtcactctttaactcactcacacacacaccctctcacacacacacactctctttaacacacacacacacacacacacactaactcacagactcacactctcagatacacacacacactctttaactctcacacacactaactcacacacacacagtcactctttaactcactcacacacacacacacactcactcacactctctcactctttaactcacacacacacacactcactaactcacagacacagactcacactctctcacacacacacacacacacacacacacacacacacacgcacacacacacactcacactctctcactctttaactcactcacacacacacacacacacactcacactctctcactctttaactcacacacacacacacacacacactctctcacacacacacaaaaagaagaaataaggaAGCATGAAATCTGTTTTGTGTTCTACTTCTTTAAGGACCACACCGACATATTGGGACCTTAGTGTTATTATTCACCCTACGCCACACGAGGGACACAAAGGGAACGCCACACGAGGGAGGGACACAAAGGGAACGCCACACGAGGGAGGGACACAAAGGGAACGCCACACGAGGGAGGGACACAAAGGGAACGCCACACGAGGGAACGCCACACGAGGGAGGGACACAAAGGGAACGCCACACGAGGGACACAAAGGGAACGCCACACAAGGGACACAAAGGGAACGCCACACGAGGGACACAAAGGGAACGCCAcacgctctcctgggtgaaggtcctgtgttttacccaccTGCCACCCCCAAACCAACCTCCTTCTGCGGATTCAGGcggtcaattcacacgcaatcgcaagctAGCGTAGGTCaacggaggccaaacggcgtcgATAAACACGCAAAATAGCAAGTACGCGTCTTTTATAaacgtcagacagagttaggacacgcacggagatgagaagggtgtcGTGGACTTGTCTACCTCTGGGGGACACGCTGAGTAAGACAAAGGCCCGATAAGTCGGCGTGGCCCTTTAAACGAAGAAGAAACTTCGTGTGAATAACGGAGATTATTAGAGAAGTGATTAATCATCAGGTGATTCGTGATTTATCGGCTCTCTGCGTCCGACTCTCTCCGGTTTTATTTCCTGTTCACTGTTTTTCAGACACTTGAAGACATCACGTTGGCCTCGGAGACAGTTGGCGCTATTTTGTGAAGCTTTATAAACAGTTTCATCAAAACATGATCAAGAGATAAATTAACAAGGGTTCAACGAGAAGGTTGGACTGTTTTTAcacaatttttaatttttttgtgactttttttcttctcgaCATTTTGGCGCtttctttaaagtttttttctcccttgttctttttcaacacttttaaatatttttttattttatttttcgaAGTTTGCCAATTTTTCCgaagatttttaaaaaaagtttttagcGTTTTTTTTCCTCGGGAAattttttggaatttttttttttaaacgtttttatttttctgtcattagactctttttggattttttattttatttatttttttaacgtttGACGTTGTTTCTGTCATCAGACtctttttggatttttttgtatacatttttgacgttttttattcatttggcgatttttttaatttcctgcCGTTTTTTTCCCCGATGCTTTTTCAAAATCTTTCaaagtgacatcatgactttgcgtaaaaacatacacgcccactttcctAAAAacccaagtggcgtgttatctgcaCGCATTTTCAGCTctccattttcagcgtgtatgtcagcgctgtatacagcggacgtaaacgtacccaccacgtggcgtatttatcgcgagaacgtcacaAAAACACgaaaaaaaagttcaataaaCGGTTGAAAATTGAAAAGTCGTGCGTTTTACCCATcagccaccccaaccaaccgaCCCCCGTGGACCTCCGTCCTTtcgtactactcgctacggtgaaaattcacacataatgtaggtcaatggcggccgaacggcgatgacaaacacgctaaaaagcgattatgcgtcttgatgaCACGCCAAAATGGCGTACGAATTGGCgcgtcatacatacgccactttatgacaTCAGTCTGGAATATTTGGACTTTATTTTTCTCGACATTCGGCGCTTTCTTTAAATGCTTTTTTCcgttgttctttttctacacttttgactttttaattaaattttttttttttttcgaagtttGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75881 lncRNA downstream 35218 39185130 ~ 39202426 (-) False G56598
TU75878 lncRNA downstream 35218 39198738 ~ 39202426 (-) True G56598
TU75879 lncRNA downstream 41435 39113781 ~ 39196209 (-) False G56598
TU75882 lncRNA downstream 49836 39113695 ~ 39187808 (-) False G56598
TU75883 lncRNA downstream 49836 39113781 ~ 39187808 (-) False G56598
TU75913 lncRNA upstream 8854 39251592 ~ 39303898 (-) True G56620
TU75912 lncRNA upstream 27521 39270259 ~ 39366294 (-) True G56619
TU76021 lncRNA upstream 39277 39282015 ~ 39288126 (-) True G56707
TU75906 lncRNA upstream 50898 39293636 ~ 39310030 (-) True G56613
TU76023 lncRNA upstream 65402 39308140 ~ 39308617 (-) True G56709
XM_039799997.1 mRNA downstream 321284 38913720 ~ 38916360 (-) True LOC120558769
XM_039799720.1 mRNA downstream 670009 38538673 ~ 38567635 (-) True LOC120558637
XM_039799719.1 mRNA downstream 706581 38508492 ~ 38531063 (-) True pcsk1nl
XM_039800481.1 mRNA downstream 885091 38343487 ~ 38352553 (-) True LOC120559059
XM_039800480.1 mRNA downstream 900738 38329266 ~ 38336906 (-) True LOC120559058
XM_039800156.1 mRNA upstream 90524 39333262 ~ 39348187 (-) True LOC120558856
XM_039799446.1 mRNA upstream 223488 39466226 ~ 39628477 (-) True plxna3
XM_039799936.1 mRNA upstream 797247 40039985 ~ 40132853 (-) True gripap1
XM_039799937.1 mRNA upstream 797247 40039985 ~ 40132852 (-) False gripap1
XM_039799943.1 mRNA upstream 1008818 40251556 ~ 40254265 (-) True LOC120558739
TU75873 other downstream 35218 39198738 ~ 39202426 (-) False G56598
TU75880 other downstream 35218 39198738 ~ 39202426 (-) False G56598
TU75903 other downstream 280444 38955694 ~ 38957200 (-) True LOC120558774
XR_005639179.1 other downstream 321284 38913720 ~ 38916360 (-) False LOC120558769
TU75943 other downstream 334676 38902484 ~ 38902968 (-) True G56645
TU76064 other upstream 155027 39397765 ~ 39459874 (-) False G56718
TU76067 other upstream 266814 39509552 ~ 39534640 (-) False plxna3
TU76071 other upstream 307760 39550498 ~ 39614237 (-) True G56721
TU76679 other upstream 1418287 40661025 ~ 40661886 (-) False LOC120559369
TU76612 other upstream 1591360 40834098 ~ 40903924 (-) True G57041

Expression Profile