RNA id: TU75909


Basic Information

Item Value
RNA id TU75909
length 3059
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G56616
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 39217008 ~ 39248802 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atacaggATTATAACGTAAAACAGACACTGGCAGCTTCAAGGGAGGCGCCAAGCGTGAACATAGtctaaaacaaatacaataaaataaatcaagacagttaatatatatataaaaataaagaactgATGCTAAAAACAAGACGATGAAACACTGACTGATGATTTTGTATGATTCAGTAAATCTAAATATTGTTTTAGTGTCTTAATTCGGATTAACAAACCACTAACGTTCAAAATCTCTCAGTTCAGGTGTCATCTACTTTATTATCAGGAGTCGGTCTACACTTTAAATCACGAGTAAATCTCATTATCGTGATGTAATATGAAATGTAAAGAACTTACATTTTGTGTGTTAACtctaagacacaaaaacataggttGAAACAAACTGTATGTTacaacttaaaggtgccctgccacacgtatgtCATGACATACAAAAAAATTTGTGGAAAAATGCCGGTCGACAGCCTCCacaggcaagctaacgttagtttagctaacagctaattcggctgaccgctaggtgattgtagcggtctgccgttagcctccataggcaagctaacgttagtttagctaatggctaatttggctaaccgctagctgagacagcatgtaataactttaaaaagaccctcaaaataaaacttgaaaataaaacgttaacatatataacagctgttaggtCAGCTCTACTGTACTTGTgctaatttaaaatacaatcactcaatatttgtctttattgttattactgtaaagtcttaatgtagctgtagctgcttctcccattaagtttgactttattttagactgaatctagctgtcagctagcggttagccgaattagctgttagctaaactaacgttagcttcacgGTGGAACAGATTGTGCAGtgtcgtatcctcggtaaaacagtatCATCATCTCCGCGTGCGCAGAATGGATCGTGAAGGCAtcacggatcgtgtaccgacagttAGCTTGTACTCCTCTATAGGTCTGAATGCTCTTTGATTCTTTATACGGTGGCCTTGAAGGACAAACCAACGACAGCAACgacatttcacaaaaaatgGTCTAAGAAATGTCGTTTTGTTTGGTGAAATGTTGCGTTTTCTGAAATGCCGTCGCGGTTTGTcgctcagggccaccgtactttTATCTCGTAGGAAGTCTTCTTTACAAATAGATGTTATTTAGTTTGGTACAAGGAGAACTAAACGCTGTACGATGGTTCAACCAGACAGACGACTGACCGAGACAAAGATCTCTCTGAGTAACAGCGCTGGGTTGCACCAGCTACTTGTAGGTTTAGACTAGTTTGAACGTAACATTTTAAGCGTTTGCACCAGCTGAAGTAGTTCTAACGTAGACGTCCTGTATGTTacaacttaaaggtgccctgccacacgtttttcatgactttgtggtgatgtctgaaggtctaccatggactctgtaaccttggttaccttgtttcaagccattctagcgcggtatagaaagcctgcaggaagactcggctCGATTTGTGCTTtaattaatattcaacgagctaatcTGCTTGACTCtcattggctaacagctagccaatgagagcctggcaccttcctctctctctctgtgtgtgtctccgttctcttcgggaaacaacaacaaacttgtagctagcgagctccacgctgaaaatgtcaagttatgAACAAGATGTGGACGGTTCAACAAGTCAAGgtctgctcggttctttcagggaatgattgtaaagatttataaagaatatgtttaggacatttcctctctaactgggaggttttataaagaatatgtttagggcatttcctctctaactgggaggttttataaagaatatgtttagatcatttcctctctaactgggaggttttataaagaatatgtttagatcatttcctctctaactgggaggttttataaagaatatgtttagagcatttcctctctaactgggaggttttataaagaatatgtttagggcatttcctctctaactgggaggttttataaagaatatgtttagatcatttcctctctaactgggaggttttataaagaatatgttagatcatttcctctctaactgggaggttttataaagaatatgttaggtcatttcctctctaactgggaggttttataaagaatatgtttagagcatttcctctaactgggaggttttataaagaatatgtttagagcatttcctctaactgggaggttttataaagaatatgtttagggcatttcctctctaactgggaggttttataaagaatatgtttagggcatttcctctctaactgggaggttttataaagaatatgtttagggcatttcctctctaactgggaggttttataaagaatatgtttagggcatttcctctctaactgggaggttttataaagaatatgtttagggcatttcctctctaactgggaggttttataaagaatatgtttagatcatttcctctctaactgggaggttttataaagaatatgtttaggacatttccaccaaaaccagttccttccttagactatttagcagagccaccgtcgctgcgtccagttcttagcgccgcccagaacgactgtgattggtttaaagaaatgcaaacaacccagagagtttctttctcctatcccagaatgcatctgtggtgcagccagacctttctccgcagcgctgtggaggtagaGCTGGATATAGGATACTATATGTTTTGTTTCCTATAGCTGGATATTTTAACGGTTATTGTAAAAGCAACTTTGTGGAAGAAATAATCAGGATTTAATACTATTGTGGTGAAAAGGCAGATATTAAAAGTCCATTTCTGGATTTTATGAATTGatagcaggtgtgtgtgtgtgtgtctgtgtgtgtctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtgtgtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75881 lncRNA downstream 14582 39185130 ~ 39202426 (-) False G56598
TU75878 lncRNA downstream 14582 39198738 ~ 39202426 (-) True G56598
TU75879 lncRNA downstream 20799 39113781 ~ 39196209 (-) False G56598
TU75882 lncRNA downstream 29200 39113695 ~ 39187808 (-) False G56598
TU75883 lncRNA downstream 29200 39113781 ~ 39187808 (-) False G56598
TU75913 lncRNA upstream 2790 39251592 ~ 39303898 (-) True G56620
TU75912 lncRNA upstream 21457 39270259 ~ 39366294 (-) True G56619
TU76021 lncRNA upstream 33213 39282015 ~ 39288126 (-) True G56707
TU75906 lncRNA upstream 44834 39293636 ~ 39310030 (-) True G56613
TU76023 lncRNA upstream 59338 39308140 ~ 39308617 (-) True G56709
XM_039799997.1 mRNA downstream 300648 38913720 ~ 38916360 (-) True LOC120558769
XM_039799720.1 mRNA downstream 649373 38538673 ~ 38567635 (-) True LOC120558637
XM_039799719.1 mRNA downstream 685945 38508492 ~ 38531063 (-) True pcsk1nl
XM_039800481.1 mRNA downstream 864455 38343487 ~ 38352553 (-) True LOC120559059
XM_039800480.1 mRNA downstream 880102 38329266 ~ 38336906 (-) True LOC120559058
XM_039800156.1 mRNA upstream 84460 39333262 ~ 39348187 (-) True LOC120558856
XM_039799446.1 mRNA upstream 217424 39466226 ~ 39628477 (-) True plxna3
XM_039799936.1 mRNA upstream 791183 40039985 ~ 40132853 (-) True gripap1
XM_039799937.1 mRNA upstream 791183 40039985 ~ 40132852 (-) False gripap1
XM_039799943.1 mRNA upstream 1002754 40251556 ~ 40254265 (-) True LOC120558739
TU75873 other downstream 14582 39198738 ~ 39202426 (-) False G56598
TU75880 other downstream 14582 39198738 ~ 39202426 (-) False G56598
TU75903 other downstream 259808 38955694 ~ 38957200 (-) True LOC120558774
XR_005639179.1 other downstream 300648 38913720 ~ 38916360 (-) False LOC120558769
TU75943 other downstream 314040 38902484 ~ 38902968 (-) True G56645
TU76064 other upstream 148963 39397765 ~ 39459874 (-) False G56718
TU76067 other upstream 260750 39509552 ~ 39534640 (-) False plxna3
TU76071 other upstream 301696 39550498 ~ 39614237 (-) True G56721
TU76679 other upstream 1412223 40661025 ~ 40661886 (-) False LOC120559369
TU76612 other upstream 1585296 40834098 ~ 40903924 (-) True G57041

Expression Profile