RNA id: TU76067


Basic Information

Item Value
RNA id TU76067
length 669
RNA type TUCP
GC content 0.63
exon number 5
gene id plxna3
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 39466226 ~ 39628477 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCCAGGAAGGACGAAGAGCAACAtggagGGTTGTCCTCAGATCATCCCCACCTCTGACATCCTGGTCCCGGCCGGGATGGTCCGTCCAATCACGCTGCGGGCTCGTAACCTCCCCCAGCCTCAGTCGGGTCAGAAGAACTACGAGTGTGTGTTCAGCATCCAGGGGAAGGTGCAGCGCATCCCAGCTGTCCGCTTCAACTCCTCCTGCATCCAGTGTCAGAACACCTCGtaTTGGTACGAAGGGGACGAGGCTGGAGACCTCCCTGTGGACTTCTCCATCGTCTGGGACGGAGACTTCTTCATCGACAAGCCCGCGTCTATGAAAGCGCTGCTGTATAAGTGCGAGGCTCAGCGCTCCAGCTGCGGCCAGTGCCTCAAAGCGCCGTCGGCCTTCGAGTGCGGCTGGTGCACCGAGAGCAGGAAGTGCCTCCTGCGCCAGCACTGCCCCGCCGCCGAGCAGAACTGGATGCACCACGGGCGCCACAACCTGCGCTGCAGCCACCCGCGCATCACCAAGATCGACCCTCTGACCGGACCCCGAGAGGGGGGGACGCGGGTGACCATAGAGGGGGAGAACCTGGGTCTGCAGGTGAAGGAGATCGCTCACGTTCAGGTGGCCGGAGTCCGCTGCAACCCTGTCCCGGCGCAGTACATCAGTGCCGAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76113 lncRNA downstream 13395 39495274 ~ 39496157 (-) True G56739
TU76039 lncRNA downstream 31632 39356134 ~ 39477920 (-) False G56717
TU76038 lncRNA downstream 31632 39368304 ~ 39477920 (-) True G56717
TU76055 lncRNA downstream 32397 39455252 ~ 39477155 (-) True G56718
TU76072 lncRNA downstream 77736 39431348 ~ 39431816 (-) True G56722
TU76070 lncRNA upstream 16446 39551086 ~ 39614237 (-) False G56721
TU76069 lncRNA upstream 25286 39559926 ~ 39614237 (-) False G56721
TU76074 lncRNA upstream 27256 39561896 ~ 39571157 (-) True G56724
TU76075 lncRNA upstream 64750 39599390 ~ 39604614 (-) True G56725
TU76077 lncRNA upstream 65238 39599878 ~ 39604156 (-) True G56727
XM_039800156.1 mRNA downstream 161365 39333262 ~ 39348187 (-) True LOC120558856
XM_039799997.1 mRNA downstream 593192 38913720 ~ 38916360 (-) True LOC120558769
XM_039799720.1 mRNA downstream 941917 38538673 ~ 38567635 (-) True LOC120558637
XM_039799719.1 mRNA downstream 978489 38508492 ~ 38531063 (-) True pcsk1nl
XM_039800481.1 mRNA downstream 1156999 38343487 ~ 38352553 (-) True LOC120559059
XM_039799936.1 mRNA upstream 505345 40039985 ~ 40132853 (-) True gripap1
XM_039799937.1 mRNA upstream 505345 40039985 ~ 40132852 (-) False gripap1
XM_039799943.1 mRNA upstream 716916 40251556 ~ 40254265 (-) True LOC120558739
XM_039800490.1 mRNA upstream 1001432 40536072 ~ 40566494 (-) True LOC120559070
XM_039801032.1 mRNA upstream 1046031 40580671 ~ 40594368 (-) True LOC120559367
TU76064 other downstream 49678 39397765 ~ 39459874 (-) False G56718
TU75886 other downstream 266814 39237644 ~ 39242738 (-) False G56599
TU75873 other downstream 307126 39198738 ~ 39202426 (-) False G56598
TU75880 other downstream 307126 39198738 ~ 39202426 (-) False G56598
TU75903 other downstream 552352 38955694 ~ 38957200 (-) True LOC120558774
TU76071 other upstream 15858 39550498 ~ 39614237 (-) True G56721
TU76679 other upstream 1126385 40661025 ~ 40661886 (-) False LOC120559369
TU76612 other upstream 1299458 40834098 ~ 40903924 (-) True G57041
TU76607 other upstream 1343242 40877882 ~ 40884606 (-) True G57036
unassigned_transcript_237 other upstream 1406214 40940854 ~ 40940926 (-) True trnak-uuu_8

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU73251 True 972 TUCP 0.63 7 CM030126.1 44632750 ~ 44651967 (+)