RNA id: TU76113


Basic Information

Item Value
RNA id TU76113
length 500
lncRNA type intronic
GC content 0.50
exon number 2
gene id G56739
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 39495274 ~ 39496157 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

accacagtctgatctgatcacattcatacctggaagctgcccagtaccaccacagtctgatctgatcacattcatacctggaagctgcccagtaccaccacagtctgatctgatcacattcatacctggaagctgcccagtaccaccacagtctgatctgatcacattcatacctggaagctgcccagtaccaccacagtctgatctgatcacattcatacctggaagctgcccagtaccaccacagtctgatctgaccacattcatacctggaagctgcccagtaccaccacagtctgatctgatcacattcatacctggaagctgcccagtaccaccacagtctgatctgaccacattcatacctggaagctgcccagtaccaccacagtctgatctgaccacattcatacctggaagctgcccagtaccaccacagtctgatctgatcacattcatactggaagctgcccagtaccaccacagtctgatctgatgac

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76039 lncRNA downstream 17354 39356134 ~ 39477920 (-) False G56717
TU76038 lncRNA downstream 17354 39368304 ~ 39477920 (-) True G56717
TU76055 lncRNA downstream 18119 39455252 ~ 39477155 (-) True G56718
TU76072 lncRNA downstream 63458 39431348 ~ 39431816 (-) True G56722
TU75867 lncRNA downstream 75263 39313225 ~ 39420011 (-) True G56595
TU76096 lncRNA upstream 1332 39497489 ~ 39563825 (-) False G56734
TU76116 lncRNA upstream 19135 39515292 ~ 39516088 (-) True G56741
TU76117 lncRNA upstream 29213 39525370 ~ 39536821 (-) True G56742
TU76084 lncRNA upstream 34994 39531151 ~ 39533594 (-) False G56734
TU76086 lncRNA upstream 34994 39531151 ~ 39555997 (-) False G56734
XM_039800156.1 mRNA downstream 147087 39333262 ~ 39348187 (-) True LOC120558856
XM_039799997.1 mRNA downstream 578914 38913720 ~ 38916360 (-) True LOC120558769
XM_039799720.1 mRNA downstream 927639 38538673 ~ 38567635 (-) True LOC120558637
XM_039799719.1 mRNA downstream 964211 38508492 ~ 38531063 (-) True pcsk1nl
XM_039800481.1 mRNA downstream 1142721 38343487 ~ 38352553 (-) True LOC120559059
XM_039799936.1 mRNA upstream 543828 40039985 ~ 40132853 (-) True gripap1
XM_039799937.1 mRNA upstream 543828 40039985 ~ 40132852 (-) False gripap1
XM_039799943.1 mRNA upstream 755399 40251556 ~ 40254265 (-) True LOC120558739
XM_039800490.1 mRNA upstream 1039915 40536072 ~ 40566494 (-) True LOC120559070
XM_039801032.1 mRNA upstream 1084514 40580671 ~ 40594368 (-) True LOC120559367
TU76064 other downstream 35400 39397765 ~ 39459874 (-) False G56718
TU75886 other downstream 252536 39237644 ~ 39242738 (-) False G56599
TU75873 other downstream 292848 39198738 ~ 39202426 (-) False G56598
TU75880 other downstream 292848 39198738 ~ 39202426 (-) False G56598
TU75903 other downstream 538074 38955694 ~ 38957200 (-) True LOC120558774
TU76067 other upstream 13395 39509552 ~ 39534640 (-) False plxna3
TU76071 other upstream 54341 39550498 ~ 39614237 (-) True G56721
TU76679 other upstream 1164868 40661025 ~ 40661886 (-) False LOC120559369
TU76612 other upstream 1337941 40834098 ~ 40903924 (-) True G57041
TU76607 other upstream 1381725 40877882 ~ 40884606 (-) True G57036

Expression Profile