RNA id: TU76581


Basic Information

Item Value
RNA id TU76581
length 2452
lncRNA type sense_over
GC content 0.45
exon number 2
gene id LOC120559188
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 41126335 ~ 41137726 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacacacacaaacacacagacacacagaatatACAAGACATAATAAACAGGAGTCAAAGAGCAGTAAAAACAAAGCATAAAAATGAAATTAGCTTGTTTAAAGTTTTGGATATTGAAAGAATCtacttcacaaacacacacacacacacacacacacacacaggcacacacacacagacagagagacacacccacaTATCTGGGATTCCTCCCCATATATAGAATGTGATTTTAAACCCACAGAACTGCTGATTAATCAGACCTGTGTCTtcattctgatgtttttgtgatatcTATTAGTTCATGTGGCAGAGCAGCATCCTCTCTTCCGAGTCTCTGAGGTGTCGGGAGTGTTGCCGCTGTAGTTTGACACTTAATTCAAAGCATTAATGAGATTTTAGAGAAGTGTTTGTGCTTCTGCTCATCCAGCAGTATTTAGGACACGAGTGGACGCCAGCTAGCAGGTCTTATTCCTGGGAAACCGAAGCCAAATTTAACAAGAATTCCCAGGAAATACTTTTGATCTCAACATCCAACCGTAGTTAGGTCATGTAACGGACAGCTGAAGGGGTTTCACAGTCTACGCTACAGACGTCTACAGCTTTATTCCTACCGTAGTGAACGGGTCAGGTACCTCAAACACAACACGAGCACAAGCATTAATTACAGGCAGACAGAACCAAATCTGCAGAGGGTTTTCTTACCGTTTTCCTcggtgatccagaatgaaaatctgtgGGATTTAGTGGACggtccagactgatctcatgaaatggcGTATATATGACATGCCAATTTGTATGctattattggcgtgttatcaagccgcatactcgctttttagcgtgtttattcaacgccgtttggcctccgttGACTTACATTGacaccgtagcgagtagtatggaAGTGGAGGTTGGGTCAGACACAGGACtgtcacccaggagaccggggatcaggTCCCACAtgtcacatttcctaaacccaaaccgtagctttcttctcgcgataacacgccaagtggcgtgtatgtatgtgtacgtCTGCTGTATCCAGCGTAGACATCCACGCAGATAGCTCAAcatgcatacagataacacaccACTTGGCTTCAGAAAGTGCGTGTATGTTTaggcgaagtcatgatgtcacgttgacCAGTCTTAGGTTTTATTTTAAGTTGTCTAAAATCTGTGTCCGCGGACTGTGTGTGACCCTGATTATTAGGGAATATTTCCCGGCTAGAAAACAGTCGACATTAAGGTCTGTAGATGATCTAAAAACCTAAACTGTCTTCAAGGATGAATACTACaagaaggaagagagaaaacCTGTTCAGGTGATCTGGGTCAACTGGCTTTTAGTGTTAAATCCGGGCAACAGAAAAGTGGAATCAGTGCATCTTTACACATCCACACAACAGCCTCTGGATGCTCTCTCTCCTGGCAGTCAAACTATCTGCCCCTCTGGCTCTCAATCAGCAACATAgcctgtaaaaaaataatggactAATGGACACAGAGACCCACATTTAGCTTTGTTAGCTGGAGCCTGTTGTGTGGATCTCCCATGATCCTCCTCTTCTCTGACCTCCCTGACCTCGCACACCTTCATCACCTCTCAGCCAATAACCACACATCTGCCTTCATCATTTCCTCTCTGCCTCCCTTTCTTCCTTGTTTCTTTTTCCTCCCTTTTCTCAAGGCGCTGACGCACCGAGCCGATAATCTGACAGtgtggcgaggtcggtgactcgagtccgTTCGGTGTGTttcgtgccgtcgtcagtctgaggaCCCGTCGGCTTTAATTTGGGCCGATTCCGACAacgagcgtgactagagtctctcaaaatctgacaaatcttttaaactgacctttgtcgatctgaaatgaagaccgattcagacactgcacagcctatttctctcttcacatgttttcagaaacatgtttcggtgaactattttagtccaaaatgaaatcgtattctgaacgagccgccatgatggtctggctttgaatttctggagaaaacaaacatgtgacacgttcatccaatcagctgccggttttcatttatttgggcAACAATCctgattagcgccgcctgctgttatggagacgtattaggtctcgtctcttcggtgtgttctgaggaactatAAGgacctcggggagactgatcagtcccaCTGGCTCTCCTCCTGACAGTCAgctgtctggttggtgtgtcagagcctttaccTCCACATGGcccatccatccttccatccttccatccattcatccatccattatttcacatttctatAATCCTGAGAagcccctcttcctctctgtctgttgtAAACTGCTTGTCCTTCTCTAtattctctctttccttccttccttttcctttccttttcttaTTTTTGGATGTTCCCTTCTTTGTCTCCCCTTTGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76599 lncRNA downstream 56 41121271 ~ 41126279 (-) True G57031
TU76600 lncRNA downstream 56 41121397 ~ 41126279 (-) False G57031
TU76605 lncRNA downstream 13374 41109710 ~ 41112961 (-) True G57034
TU76759 lncRNA downstream 53821 41071376 ~ 41072514 (-) True G57144
TU76753 lncRNA downstream 62663 41063011 ~ 41063672 (-) False G57142
TU76770 lncRNA upstream 19313 41155931 ~ 41158939 (-) False G57149
TU76766 lncRNA upstream 21575 41158193 ~ 41158939 (-) True G57149
TU76778 lncRNA upstream 21575 41158193 ~ 41159605 (-) False G57149
TU76787 lncRNA upstream 42805 41179423 ~ 41180486 (-) True G57155
TU76802 lncRNA upstream 243999 41380617 ~ 41381119 (-) True G57169
XM_039800493.1 mRNA downstream 100861 40845208 ~ 41025474 (-) True itpr3
XM_039801396.1 mRNA downstream 290126 40777034 ~ 40836209 (-) True LOC120559573
XM_039801035.1 mRNA downstream 456992 40660809 ~ 40669343 (-) True LOC120559369
XM_039801033.1 mRNA downstream 478563 40637691 ~ 40647772 (-) True LOC120559368
XM_039800495.1 mRNA upstream 29237 41165855 ~ 41199134 (-) True LOC120559074
XM_039799676.1 mRNA upstream 159462 41296080 ~ 41707346 (-) False LOC120558615
XM_039799675.1 mRNA upstream 159462 41296080 ~ 41707346 (-) True LOC120558615
XM_039799674.1 mRNA upstream 159462 41296080 ~ 41313319 (-) False LOC120558615
XM_039799677.1 mRNA upstream 159462 41296080 ~ 41313309 (-) False LOC120558615
TU76730 other downstream 47585 41020480 ~ 41078750 (-) False G57134
TU76729 other downstream 47585 41070363 ~ 41078750 (-) True G57134
unassigned_transcript_240 other downstream 174740 40951523 ~ 40951595 (-) True trnak-uuu_11
unassigned_transcript_239 other downstream 177734 40948529 ~ 40948601 (-) True trnak-uuu_10
unassigned_transcript_238 other downstream 180808 40945455 ~ 40945527 (-) True trnak-uuu_9
TU76906 other upstream 591425 41728043 ~ 41731776 (-) False LOC120559079
XR_005639137.1 other upstream 767522 41904140 ~ 41918741 (-) True LOC120558546
XR_005639139.1 other upstream 767522 41904140 ~ 41918739 (-) False LOC120558546
XR_005639138.1 other upstream 768412 41905030 ~ 41918741 (-) False LOC120558546
XR_005639141.1 other upstream 991625 42128243 ~ 42134658 (-) True LOC120558559

Expression Profile