RNA id: TU76588


Basic Information

Item Value
RNA id TU76588
length 1463
lncRNA type intronic
GC content 0.46
exon number 2
gene id G57029
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 40969988 ~ 40978899 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttcttttaaattcaagtttattttgtattgcaaATAATACAAAACATGTTCCTAAATCCCCAGAGATTGTTGTACACTAACAGAGTTCTCTCTGTTGAGTCACACTGATAAGTATATGGATCAGTAACTGCACACCAGTACTCCGCTGCATCTCCCAATGAGATATCAGAAATAACCAGGATACCTTTATTATCGTACCAGCCCACTCTGCTCATGCTGTAATTATACTCTACACCAAcgattcttccctctgttcggtTCGACTTGATAAACCAATCATTGGTCATACCATCTCTCCAATCTGtgcatctgagagtgacttctccctctgagaagcGCTCTAAAGTAGGGGGGCCAAATTTGGGGCACACCACCAGATCATATGATTGCACTCTCATAGAGACTGTACAGTAATACAGacctgagtgatttaacatCAGAGAGGAAAACACCAGTgagtagttttggtctactgaaggaacagtctggttTTGTTGTCCTAGGTAAGAGGAGAACCGATAAGTCCAACGTGGGGGCTGTTCATCAGTAGAGTCAGCGATAGAGCACGGCAACACAGCGGTCTCTCCCACTGAGTGGTAGATCACCTCAACCCGTAGTTCCAACCGTACAATGTtactgctaacacactgctgttggttcatcaccagacagATGTAGTCTCTAAAGTCTGTTGCTGTGAGGTTGGAAATACGaagagctgatgtgtttgtcaccacttggtatcttcctctaacattgtccatcactgaAGTCGTATTGTCCCCAAAAACTCTGCTCCATATTTCTTGATCATGTGTAGAGTCCTGTTTGAGCCACTGGACATCCAGATTATCAGCTGCTCCCTCACATGGCACGTCCACTGTTTCTCCAAATCTCGCTGTGATATGACTCTGATCTACTGTAGTACAAACAATAATAGTGATGTTGTTGTCATGCGTCACgttgccctcagtccaacactcctctcggtacctgccggagtctgaatgggtcaggtCGAGGATGGTGTAAGAAGTTCTCCAGCTGTCAAGTCGTTGTTTCAGGTCTTCAGGTACTGAGgagctgttggaccagaggtcagaggtgttccacaggacaagcttctcctcaccaacagatctggagatcaggcaggagttGGTGTTCTCGGGGAGGTTGAAGGTGTGATACCTTCCTTCCTCTCGGAAGATGATGCGTTCTTGTGCATGGATGTAGTTgctgagagcaaacagcaggaaggagagctctgtgactgcagccattctgctccgaggtcgacaaacactgacaccactcagctcatatacgctctacaccaaccctcatcagcagctgctctttATCTGGTATCACACAGTAGATaagagagggggtgggggggtgtctgtctgtgtgtgtgtatacacacagacagacacacagacaccatagaggtttaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76609 lncRNA downstream 30495 40927305 ~ 40939493 (-) True G57038
TU76722 lncRNA downstream 50662 40911288 ~ 40919326 (-) True G57128
TU76721 lncRNA downstream 80085 40888417 ~ 40889903 (-) True G57127
TU76718 lncRNA downstream 118709 40841045 ~ 40851279 (-) False G57125
TU76719 lncRNA downstream 118709 40841045 ~ 40851279 (-) True G57125
TU76733 lncRNA upstream 33174 41012073 ~ 41110667 (-) False G57134
TU76614 lncRNA upstream 54592 41033491 ~ 41080704 (-) True G57043
TU76731 lncRNA upstream 65631 41044530 ~ 41071265 (-) False G57134
XR_005639363.1 lncRNA upstream 75206 41054105 ~ 41054885 (-) True LOC120559792
TU76746 lncRNA upstream 84112 41063011 ~ 41063672 (-) False G57142
XM_039801396.1 mRNA downstream 133779 40777034 ~ 40836209 (-) True LOC120559573
XM_039801035.1 mRNA downstream 300645 40660809 ~ 40669343 (-) True LOC120559369
XM_039801033.1 mRNA downstream 322216 40637691 ~ 40647772 (-) True LOC120559368
XM_039801034.1 mRNA downstream 322231 40637691 ~ 40647757 (-) False LOC120559368
XM_039801036.1 mRNA downstream 367898 40598805 ~ 40602090 (-) True LOC120559370
XM_039800728.1 mRNA upstream 149402 41128301 ~ 41137726 (-) False LOC120559188
XM_039800495.1 mRNA upstream 186956 41165855 ~ 41199134 (-) True LOC120559074
XM_039799676.1 mRNA upstream 317181 41296080 ~ 41707346 (-) False LOC120558615
XM_039799675.1 mRNA upstream 317181 41296080 ~ 41707346 (-) True LOC120558615
XM_039799674.1 mRNA upstream 317181 41296080 ~ 41313319 (-) False LOC120558615
unassigned_transcript_240 other downstream 18393 40951523 ~ 40951595 (-) True trnak-uuu_11
unassigned_transcript_239 other downstream 21387 40948529 ~ 40948601 (-) True trnak-uuu_10
unassigned_transcript_238 other downstream 24461 40945455 ~ 40945527 (-) True trnak-uuu_9
unassigned_transcript_237 other downstream 29062 40940854 ~ 40940926 (-) True trnak-uuu_8
TU76612 other downstream 66064 40834098 ~ 40903924 (-) True G57041
TU76730 other upstream 41581 41020480 ~ 41078750 (-) False G57134
TU76729 other upstream 91464 41070363 ~ 41078750 (-) True G57134
TU76761 other upstream 151983 41130882 ~ 41131470 (-) True G57146
TU76906 other upstream 749144 41728043 ~ 41731776 (-) False LOC120559079
XR_005639137.1 other upstream 925241 41904140 ~ 41918741 (-) True LOC120558546

Expression Profile