RNA id: XM_039799262.1


Basic Information

Item Value
RNA id XM_039799262.1
length 3655
RNA type mRNA
GC content 0.51
exon number 12
gene id si:rp71-17i16.5
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 33696847 ~ 33710767 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTAGGATCAGAGCAGCACCTGTCTATGTAAGATTTCTTTGGTTCAGGATTTGCTCCCCTAAGTATCGATGGACCCTGCATTGCCCTTGAATCAGGCTGTCAGTCCACATGCTGTGGACTATCCATCTGGGATGTCAACTCAAGGCTGCTCTGCGAACAGCCTGAAGTTCATCTGTGAGTTTAAGCCTGGGCCTGGTCCACCGAAGGCGTCTGGCGATGAGGATTACAATGTCAATATGGATTGTAAGCCAGTGTCAGTCATCCTCCCTGCGCAGTGCAGTGTGTACCAGCTGCGGCTACGCATCTGTATGCAGGCACAGGAACAAAATTGCCATCCAGACCCACTTGCTGTATTGGAACCAGAGAAATACACTCTGCTCTATGCCAGGGGGGAAGACTGGTATGAAGCCTACGATGACTGTCAGGTTATCAGGACGTTAGACATTCCATGGTCGTGTGATGACACTGGGTGTCTGTTGGCGCACATAGTGGTAAAACCGCTGATGGCAGTTGAttcagaggagaagaagaaacaacAGCAGTGTCTGGCTTACCTGATTGGACACGACCTGGAGAATGAACCGTCTGACAGACTTGGTGAGCTCACTTTCACCCGTAGGACGCTGGCATCTCCGAGAAGACAAGAGCTAAGGGATCGGGATGACGTGCTATATGCCACAGAGCCTTGGATAACACGCGCCCCCATTCCAAATGACCTACAGGACCAGCTCAACAGAAAGCTCCCTGTCACTCTCCATTTCATGAACAAGATCAGCTTCAGCATAGGGGTGGATTTTAGTGCAACACCAGATGTTCTCCTTACAGTATTCAGAAGGGTGATGGTAGACCAGGAGCTTGATTATGACACTTCTGAACGTCTGGTGTTAAAAGTCTCTGGGAGGGAGGAGTTTTTATCTGGAGACTACCCCCTGAGCGATTTCCTCTGGGTTCGCCAGTGCTTGAAAACCATTCAAGACCTCCACCTCTCTGTGGTCCCTGTGTCGCAGCTTGTCAATGAGACTGTCAAGTTTGTGGACTGGCCGCTTGTCGATGGATCCAGTGGCCAGTTTAGCTCCCACGATGATCTCCGGCTCGAAGGGAAGGATTTGGATGACATCTTCATGATATCCTTGTGGGACTGCAACAGAAGACTCAGAGTGAAATTGCTTGGTTTTGACGTCCCAAAACTTCCAAGCAAATGTCCTCAGTCTGTTTATGTAAAAGCCTCCATACTTTATGGTAACAAGGTTCTCTCTTCAGTGTCCTCCCTTCCCAAGGCCTTCGCAGATGAAGTGCTGTGGAATGAGTGGCTGGACTTTGATGTTCTCCTCAGGGATTTGCCACGTGGAGCCAAGCTGGGTTTCACTATTATTGCTAGTGATGGTGACGTCGCCCCAGTAACCAAAGACCTGCAGAAAGAGAAGGGGAAGGTCCTCTACTTTGTCAATCTGCTCTTGATTGATCACAGGTCCGTCCTTAGCCAGGGCCCCTACACCATGCATATGTGGCCCTACCCTGACCTGGAAGAAGGGGCCATCACCTACCAGGCAGACAAGTTGTCTTCTGCTACTAACCCAGACATAGCTGACTCCATGGCTATCAGCTTCCTTCTAGACCGTTACAGCTTCCCTGTGGTTCTGCCAAATAACTTCAGCTCCTCTGAAAGCTCCCGCAGTCCTGCATCCAGGCGCAACCTGACCAAATCTACTGCTTCCTCTactgctctctcctcctcacccTCCTCACCCTCCTCACCCTCCTCAACCTCTTCCACCTCATCCAGCACAGAttcttcctctctgcatgtGGAACCTCTCCAGGACTCACTGACTGACACTGTAACTCTCAGATTCCCATCTCCAGTCACCAGCACCAAAAGGGCTGGACTCACAAGGTTCCGGGAGGAGAGCATCCGCTACGCATCAAATCTACCCCATTACCTGCGTAATGTTGATTGGATGAACCGCAGAGTGGTTGAGGATGTCCACTGGCTACTGGGAAACTGGGATCCTGGAGAACTGGATGTAACATTGGCCCTGGAACTAATAGGCATGGACTTTGCTGACGTAATGGTTAGGAGACTGGCAGTCCAGAGATTGGAGAGCCTGTCTAATGATGACATATTGAAGTATCTGCTGCAGCTggtgcaaACCCTCAAAGTGGAATCTTACCATGACAGTTTCCTCGCTCGGTTCCTCATCCGAAGCGCTCTGCGGAGCAAGAGAATTGGCCACTTCTTCTTCTGGTATGTCCGTAGTGAGGTGGCAGGGTGTCTGTACTTCCGCCAGCGCATGGCTGTGATTCTGGAGGCTTACCTGCTGGGCTGTGGTCAGGCCATGCTTGACAGCTTCACCCAGCAAGTTCAGGCTGTGGAGGCCCTACAGGAGGTTGCTATAAGGATTAAAAACCTCTACCCCGACAGGACCGACCTTCCTCCTACAGCTCATTTCAGGCTTCAAGAGCTTCTTAGAAACTGTAATCTGCCAAATGAATTCCTGCTGCCCTTTGACCCCCGCATCAAAGCTGGAAGGATCCTGCTGGACAAATCCAAGGTGATGGCCTCGAAGAAGAAGCCGCTGTGGCTGGAGTTCTCTCCCATGCCGTCGCCCACCTCTGTCACACCTGTGGGAATAATCTTCAAACAGGGGGATGACCTCAGACAGGACATGCTGGTCATTCAGACCCTGGTGGTGATGGACTCTATCTGGCAGGAGAAATCTCTGGACCTTAACCTGGTTCCGTATGGCTGCATCTCCACAGGACACAACATAGGTATGATTGAGATTGTGAGGGATGCAGCAACCATCGCTGCAGTCCAGAAGAACCAAGGAGGAACGACAGGAGCCTTCAGAAACAATGCTCTGTATGAGTGGCTCAAGTCCAAATCTCCCCTCCAGGAAGTACACTACAAGACTTCGGAGAGATTTGTGAAGTCCTGTGCTGGTTATTGTGTGGCCACCTATGTATTGGGTATAGGAGATCGACACAATGACAACATCATGATCACAGACCATGGGAACCTGTTTCACATCGACTTCGGTCACATCCTGGGTAACACAAAGCACTTCCTGGGCATGAACAGGGAGCGTGTACCATTCGTACTCACACCTGACTTCCTGTATGTCATGGGCAGAGAGAAAGGGAGCAACAGCCTCTACTTTCAGCGCTTCAGGGACACTTGCACCCAGGCTTACCTCTTGCTGCGCTCGCACTCTCGTCTGCTGGTCACTCTTTTCTCCCTCATGCTGCTGACGGGCATCCCAGAGCTGAGCGCTGCAGAGGACATGCGCTACCTGCGGGAGGCGCTCCAGGAGCAACAGGGCGAGGCAGAGGCCAAGGAGCATTTCCTCCAGCAAATCGCTGAGTGTGAGAAGATGAGCTGGACTGTGCAGACCAACTGGTGGATTCACATGTGGGCAGGCATCAAGTAGACTGTCGGTGATTATGAAACAATCCAATCACGATTGTTTTGTGGTTCCTATTCTATTATCTGCTGGCGTGACCTTCtgtgagttgattctgaaagcagCTACAAGCTCTTGGAGAACAAATTGACACAAAGCAGATTTCAGTTTACAatgttcttaaaggtcccatgacatggtgctctttggatgattttatattagaccttagtggtcccctaatactgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73443 lncRNA downstream 139188 33555800 ~ 33557659 (-) False lamb2
TU73444 lncRNA downstream 139277 33555800 ~ 33557570 (-) False lamb2
TU73395 lncRNA downstream 188424 33507434 ~ 33508423 (-) True G54949
TU73393 lncRNA downstream 189624 33506362 ~ 33507223 (-) False G54947
TU73392 lncRNA downstream 190158 33504868 ~ 33506689 (-) True G54947
TU73500 lncRNA upstream 39522 33750289 ~ 33757122 (-) True G55034
TU73523 lncRNA upstream 120282 33831049 ~ 33831559 (-) True G55050
XR_005639136.1 lncRNA upstream 146684 33857451 ~ 33875420 (-) True LOC120558540
TU73569 lncRNA upstream 155187 33865954 ~ 33951682 (-) True G55093
TU73568 lncRNA upstream 205328 33916095 ~ 33950009 (-) True G55092
XM_039801162.1 mRNA downstream 12573 33618623 ~ 33684274 (-) True lamb2l
XM_039801161.1 mRNA downstream 27208 33619197 ~ 33669639 (-) False lamb2l
XM_039801163.1 mRNA downstream 48982 33618623 ~ 33647865 (-) False lamb2l
XM_039799432.1 mRNA downstream 81907 33556681 ~ 33614940 (-) False lamb2
XM_039799431.1 mRNA downstream 81907 33556681 ~ 33614940 (-) True lamb2
XM_039800458.1 mRNA upstream 19563 33730330 ~ 33731472 (-) True LOC120559034
XM_039799669.1 mRNA upstream 53016 33763783 ~ 33764604 (-) True taf13
XM_039801839.1 mRNA upstream 244559 33955326 ~ 33963940 (-) True LOC120559811
XM_039801837.1 mRNA upstream 244559 33955326 ~ 33961162 (-) False LOC120559811
XM_039801836.1 mRNA upstream 244559 33955326 ~ 33961158 (-) False LOC120559811
TU73247 other downstream 809557 32880193 ~ 32887290 (-) True G54834
TU73146 other downstream 923361 32767357 ~ 32773486 (-) True G54756
TU73036 other downstream 1374895 32316960 ~ 32321952 (-) False LOC120558955
TU73035 other downstream 1384069 32306922 ~ 32312778 (-) False LOC120558955
unassigned_transcript_235 other downstream 2469716 31227060 ~ 31227131 (-) True trnaq-uug_1
TU73607 other upstream 313251 34024018 ~ 34127495 (-) False G55124
TU73620 other upstream 377203 34087970 ~ 34093118 (-) True G55131
TU73610 other upstream 407137 34117904 ~ 34127495 (-) False G55124
TU73658 other upstream 579639 34290406 ~ 34290887 (-) False ntsr1
XR_005639223.1 other upstream 1559131 35269898 ~ 35277854 (-) True LOC120559165

Expression Profile