RNA id: XM_039799266.1


Basic Information

Item Value
RNA id XM_039799266.1
length 3939
RNA type mRNA
GC content 0.45
exon number 16
gene id clcnk
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29474503 ~ 29492975 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggaCTCTCGCACTGCATTTTTGCTATCAAGACCGATGAAGGGCACTTGTTCCTCCAAAGAGTTAATATTAGCTACCCTGTCAACCATGACTGCTCCATCAATTCTATGCTAATATCTTAACAGAGGTCAGTGGTGGTACCAGCTACCTGCACTACACCCACACATATAACCGTACGCACAGATATAACACTTCTATTGCAACCAGACAGAATGAAGAGCCTGGATGAGGCTCCTGGGAGTAAGACATTCAGCGAGCACAACAACTGGGACCAAGAAAATCAATCGGCAGCATCCCATAATACGAGTCTGCTCCTTGGTGATCCGTGGACACCATGCCGACGGTCCCGCGCAACTGTCAAAGAGTGGCTGTTGAAGCTGAGGTGCTGTTTGGGAACAGTGTGTGGAATGGAGTGGTATTGCTACGCCGCTCTAGGAATTTTGACTGCCATCCTTAGCTTTTTAATGGATCTAAGTGTGACAAAGCTGCTGAGAGCTCACCAATGGCTTTATATAAAGCTGGAGGGCAACAGTCTGCTGCAGTTCTTCTGCTGGACTCTTTACCCAGCATGCCTTTGTGCTGTCTCATCATCATTCTCCCACAATATCTGTCCCTTCTCCACAGGTTCGGGGATACCAGAGCTGAGAACCATGCTGGCCGGTATTGAAATGCCTCAATATTTGTCTCTCACTAATATGTTTACCAAGTATCTGGGCCTTATCTGTACACTGTCAGCAGGCAGCACTGTTTACCTGGGCAAAGTGGGTCCATTTGTGCATCTTTCCACCATGGTTGGAGCCTACCTGAGCAACCTCTGCAATCTCATACAAGTCAATGAGAAGGAAAAAGCTGCTGGAGAAATGCTGGTTGTAGCTGCTGCAGTTGGTGTAGCCAGCTGCTTCGGAGCTCCCATCACCGGTGTGTTGTTCAGTGTGGAATTGATGTGTTCTCACTTCGCCGTGAGGCATTATTGCCCATGTTTCTTCTCAGCCGCCTGTGGGGCATTGACCTTTCGCCTGTTCTCAGTGTGGAGTGGAGATAGAGAGACTCCTCAGGCATTGTTCAAAACTAATTTCCCCAATGCTTTACCTTTCTACCCGCTGGAGATTCTGCCGTTCGCTTTCCTGGGGCTGCTGTGTGGAGCTGTGTGCTGCTGCTACCTCTTCTGCCACCGGTGGATCCTGCGATTCACCAAAACAAACCCGATCTTCATCAAAATGCTAACGACAGAGAAGGGTCTATACTCTGGCACAGTGGCCTTCTTCCTGGCATGTCTGACATTCCCTTACTCTGTTGGTCAATATATGGTTTCTCAGTACACCATGAAGCAGCTCCTGACCTCCTTATTAGATAACAGGCAGTGGAGCTCTCAATCCCACAATGCCTCTGTTCAACTGGGGAGCGAGCCTTTGTTGGAGTGGAGTTCACCAGGAAGTCCTTTCTACTTTTCTTTGGTTGTCTTTCTGCTCATGAAGATGTGGATGTTGGTCCTCGCCTGCACTCTGCCTCTGCCAGCTGGATACGTCATGCCAGTGTTTATCTATGGTGCAGCTTTGGGCCGGTTGCTTGGAGAAGGAGTAGCTGGACTGACTTCTGGCCAGCAGTGGGCTTCTATAAATCCTGTAAATCCTGGGGGCTACGCACTTGCAGGTGCAGCAGCCTTCTGCGGGGCAGTGACACACACCTTGTCCCCAGCTCTAATGGCTATAGAGTTAACTGGCCAATTCAGCCACGCTGTACCCATCCTCCTCGCCACTCTGCTGGCCAATGCAGTGTCTCGCTCTGGGGACCGCCAGTCTTTCTATGACGCAATCTCCATCAGCAAGAGGCTCCCACATCTGCCCTCCCTGATGAAGGTGTACCCCCGGCTGAAATGTCTTGTCCTATCTGATGCTCACTCAAAGCATTGCGGCAGGTGGAAGGATGGATTTTTACCAGCTTAGAAGCAGGCTAAGTAATGGCTGAGTCACTGGTATTGATCAACCACCTACACATCTACTATTCTCAATTTATATTATTGCAGAAAAAATACCATTGAGGATATTTCTGCATTGAAAACTATTTATTATACTTCTCAAAGTAAAGCATCTTTAATTCATTATGCTCTGGGAGAAATCCACTTTTTTCCAgacagtagcctacatctgCCAGGAAATTCACTTGTGATGAACATTCTTTTCCCATTAAAATGTGAATGGGCAAGTACGAATACTCTACACTCTCTCCAACAGTTTTGTTTATTGATGTGGTCTTTGTAGCCTACTGTAGGCCGCAACGAAATGATCCGCCACTATCTCTCAACATATCAGTTGTTAATAATCTACTGGTGTATAATACTAATTGAAAGCActaattaaaggtgctgtacttaaaataatgaaaaaacagaaggctgggattgcctccacacggcTCTCTCATACCGTTCCCCAATATGTAACATACCTACACTTTTCCAGACTGTCCTCATCCAGAaaacagagatggggactcgagtttcAGACTCGGACTTGAGTCACACTAAAGTCTCACACACAGTGACTTTAgacttgacttgagacttgtcctcaaaagacttcagactcgacTCAGACTCGAGATACGGGACTCGTgaacaatctttattttttaggAAATGTGATGATGACCTGAATGTTATTCCCATCCCTGCATTACGGCGTAACCTATAACCCACCTACGTAAGACGTAATACGTAACGTATCTGCTGCGCATGGCCACACATGACAGAGGAGAACAAACATGTGACATGCACAGGCATTTGCTGTGCCATTCATCATAAGCTTTggctttaaacacttcagacaACAAGGCCCAAACAAAAGAATCGCTGAATGCTACATATGTGGTAGCAAGATAAAGGATTCTGGCTCAACCACGTCTGATTTAATCAGCCACCTGAAAACGTATTCTGATAAGTAGCAAACATGTTTAGCTCAGCATTGGCcatctaatgttagcttgcttctTGCTTTAGCTACGACCTACGGAGGTTAACTCCAACTGTTGTTCGATTTATGTTATGAAAAAATCAATgagcgtttgtttgtttgtttgtttgccaaACTTTTGGGGGGAATTAGCGTTACGCAATCATTTACGTCCCGCTGGCTGCCACCACGTTAATTATTGACGTCGGCTGCAAACCGGTTAGAGATTTCTTGTTGATCATATAAAGTTTATATGTTACACTCTCTCCAACAGTTTTGTTTATTGATGTGGTCTTTGTAGCCTACTGTAGGCCGCAACAAAATGATTCGCCACTATCTCTCAACATACCAGTTGTTAATAATCTACTGTTGTCACCGATTAGGTATCAAAGGGAGGTCATTTTGAATTGTCAGTTTTCCTCACCAGGCATTCTGCTATGAGTAAATACTAATTGAAAGCACTGATTAAAGGTGCACTAATTAAAATATACTGAAAAAACAGCaggctgggattgcctccacacggcTCTCTCACATCGTTCCCCAATATGTGGAATACCTACGCACATCATATAAAGTTTATATGATCAACAGGGTAATGttaactaaataaaactgtagTGActacagttttatttagttaCCCTGGCTTTGAGAGTCTGGGGGTTGTGTTGACTTACAGTAGTTTATAGGCTGACATTAGGcccgttcgagatgagccaagtctgcgcagaatcgatcaccggcgatcgccgattagatttgtgtccgacttgatcccgacttgctctgacgtcatgcacacatGGACAATGATAACCTCACAAGATCAAGGCAGCCGCAGGTTTGAGACGCAGGCGCGCAGATGCTTTTTACCGACTGCAAGACCAAGGCAGAACCAGGGCATGCTGAGAAATgctttatataaacttttttattgtttttgaattgtctgatttaaaggcttattctgtacagaacacatgttgtgtg

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0044070 regulation of anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030554 adenyl nucleotide binding molecular_function
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72165 lncRNA downstream 90499 29388551 ~ 29389563 (-) True G54006
TU72164 lncRNA downstream 94210 29385123 ~ 29385852 (-) True G54005
TU72160 lncRNA downstream 99736 29377948 ~ 29380326 (-) True G54001
TU72159 lncRNA downstream 104640 29375019 ~ 29375422 (-) True G54000
TU72153 lncRNA downstream 107238 29371347 ~ 29372824 (-) True G53997
TU72201 lncRNA upstream 28815 29521790 ~ 29523462 (-) True G54038
XR_005639328.1 lncRNA upstream 183396 29676371 ~ 29678804 (-) True LOC120559594
TU72338 lncRNA upstream 183493 29676468 ~ 29678804 (-) False LOC120559594
TU72420 lncRNA upstream 321375 29814350 ~ 29815450 (-) True G54185
TU72424 lncRNA upstream 329545 29822520 ~ 29822817 (-) True G54189
XM_039801976.1 mRNA downstream 124178 29350078 ~ 29355884 (-) False LOC120559896
XM_039801977.1 mRNA downstream 124179 29350078 ~ 29355883 (-) False LOC120559896
XM_039801972.1 mRNA downstream 142464 29323865 ~ 29337598 (-) True LOC120559893
XM_039801390.1 mRNA downstream 299371 29158029 ~ 29180691 (-) True gabrd
XM_039800452.1 mRNA downstream 325837 29150403 ~ 29154225 (-) True LOC120559029
XM_039800615.1 mRNA upstream 100073 29593048 ~ 29609420 (-) True LOC120559132
XM_039800608.1 mRNA upstream 116934 29609909 ~ 29650365 (-) False ttll10
XM_039800607.1 mRNA upstream 116934 29609909 ~ 29622770 (-) False ttll10
XM_039800609.1 mRNA upstream 116934 29609909 ~ 29620791 (-) True ttll10
XM_039800613.1 mRNA upstream 116934 29609909 ~ 29619389 (-) False ttll10
XR_005639350.1 other downstream 1819416 27644783 ~ 27660646 (-) False xpc
XR_005639389.1 other downstream 2281235 27198712 ~ 27198827 (-) True LOC120559934
TU71566 other downstream 2289865 27189076 ~ 27190197 (-) False hyal3
TU71557 other downstream 2308895 27163286 ~ 27171167 (-) False ifrd2
TU72353 other upstream 268099 29761074 ~ 29765873 (-) False cdk11b
TU72358 other upstream 268099 29761074 ~ 29765193 (-) False cdk11b
TU72536 other upstream 478221 29971196 ~ 30065918 (-) False tafa5l
TU72538 other upstream 478221 29971196 ~ 30072699 (-) False tafa5l
XR_005639345.1 other upstream 515267 30008242 ~ 30065941 (-) False tafa5l

Expression Profile