RNA id: XR_005639094.1


Basic Information

Item Value
RNA id XR_005639094.1
length 2165
RNA type transcript
GC content 0.51
exon number 18
gene id clcnk
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29474503 ~ 29492975 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aCTCTCGCACTGCATTTTTGCTATCAAGACCGATGAAGGGCACTTGTTCCTCCAAAGAGTTAATATTAGCTACCCTGTCAACCATGACTGCTCCATCAATTCTATGCTAATATCTTAACAGAGGTCAGTGGTGGTACCAGCTACCTGCACTACACCCACACATATAACCGTACGCACAGATATAACACTTCTATTGCAACCAGACAGAATGAAGAGCCTGGATGAGGCTCCTGGGAGTAAGACATTCAGCGAGCACAACAACTGGGACCAAGAAAATCAATCGGCAGCATCCCATAATACGAGTCTGCTCCTTGGTGATCCGTGGACACCATGCCGACGGTCCCGCGCAACTGTCAAAGAGTGGCTGTTGAAGCTGAGGTGCTGTTTGGGAACAGTGTGTGGAATGGAGTGGTATTGCTACGCCGCTCTAGGAATTTTGACTGCCATCCTTAGCTTTTTAATGGATCTAAGTGTGACAAAGCTGCTGAGAGCTCACCAATGGCTTTATATAAAGCTGGAGGGCAACAGTCTGCTGCAGTTCTTCTGCTGGACTCTTTACCCAGCATGCCTTTGTGCTGTCTCATCATCATTCTCCCACAATATCTGTCCCTTCTCCACAGGTTCGGGGATACCAGAGCTGAGAACCATGCTGGCCGGTATTGAAATGCCTCAATATTTGTCTCTCACTAATATGTTTACCAAGTATCTGGGCCTTATCTGTACACTGTCAGCAGGCAGCACTGTTTACCTGGGCAAAGTGGGTCCATTTGTGCATCTTTCCACCATGGTTGGAGCCTACCTGAGCAACCTCTGCAATCTCATACAAGTCAATGAGAAGGAAAAAGCTGCTGGAGAAATGCTGGTTGTAGCTGCTGCAGTTGGTGTAGCCAGCTGCTTCGGAGCTCCCATCACCGGTGTGTTGTTCAGTGTGGAATTGATGTGTTCTCACTTCGCCGTGAGGCATTATTGCCCATGTTTCTTCTCAGCCGCCTGTGGGGCATTGACCTTTCGCCTGTTCTCAGTGTGGAGTGGAGATAGAGAGACTCCTCAGGCATTGTTCAAAACTAATTTCCCCAATGCTTTACCTTTCTACCCGCTGGAGATTCTGCCGTTCGCTTTCCTGGGGCTGCTGTGTGGAGCTGTGTGCTGCTGCTACCTCTTCTGCCACCGGTGGATCCTGCGATTCACCAAAACAAACCCGATCTTCATCAAAATGCTAACGACAGAGAAGGGTCTATACTCTGGCACAGTGGCCTTCTTCCTGGCATGTCTGACATTCCCTTACTCTGTTGGTCAATATATGGTTTCTCAGTACACCATGAAGCAGCTCCTGACCTCCTTATTAGATAACAGGCAGTGGAGCTCTCAATCCCACAATGCCTCTGTTCAACTGGGGAGCGAGCCTTTGTTGGAGTGGAGTTCACCAGGAAGTCCTTTCTACTTTTCTTTGGTTGTCTTTCTGCTCATGAAGATGTGGATGTTGGTCCTCGCCTGCACTCTGCCTCTGCCAGCTGGATACGTCATGCCAGTGTTTATCTATGGTGCAGCTTTGGGCCGGTTGCTTGGAGAAGGAGTAGCTGGACTGACTTCTGGCCAGCAGTGGGCTTCTATAAATCCTGTAAATCCTGGGGGCTACGCACTTGCAGGTGCAGCAGCCTTCTGCGGGGCAGTGACACACACCTTGTCCCCAGCTCTAATGGCTATAGAGTTAACTGGCCAATTCAGCCACGCTGTACCCATCCTCCTCGCCACTCTGCTGGCCAATGCAGTGTCTCGCTCTGGGGACCGCCAGTCTTTCTATGACGCAATCTCCATCAGCAAGAGGCTCCCACATCTGCCCTCCCTGATGAAGGTGTACCCCCGGCTTCCCTCCACTCCAGTCGGACAGGTTTTGGGAGCGTTATCAGTGCAGCTTAAGAAAGCAGCTGGTCCAGTGGAGATGCAGCATGCTGTCAACACCAGCACTGACACACAAATACCTGTGGTGGACTCACATGACTCTGGAGAAACATCTGGATGAGGTCTGCTGCATTTACCCAACCTCTGTCCTGTTATCACCTCACAACACCGTTCAGGAGGCCTACAGTTTCCTGAGTCTGATTGGAGCTCAGACCTTGCTTGTCGCAGACAGGGGAAGACTGGTCGGGGTCATCACATGGCCACAG

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0044070 regulation of anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030554 adenyl nucleotide binding molecular_function
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72165 lncRNA downstream 86446 29388551 ~ 29389563 (-) True G54006
TU72164 lncRNA downstream 90157 29385123 ~ 29385852 (-) True G54005
TU72160 lncRNA downstream 95683 29377948 ~ 29380326 (-) True G54001
TU72159 lncRNA downstream 100587 29375019 ~ 29375422 (-) True G54000
XR_005639101.1 lncRNA downstream 102761 29363028 ~ 29373248 (-) False LOC120558378
TU72201 lncRNA upstream 28817 29521790 ~ 29523462 (-) True G54038
XR_005639328.1 lncRNA upstream 183398 29676371 ~ 29678804 (-) True LOC120559594
TU72338 lncRNA upstream 183495 29676468 ~ 29678804 (-) False LOC120559594
TU72420 lncRNA upstream 321377 29814350 ~ 29815450 (-) True G54185
TU72424 lncRNA upstream 329547 29822520 ~ 29822817 (-) True G54189
XM_039801976.1 mRNA downstream 120125 29350078 ~ 29355884 (-) False LOC120559896
XM_039801977.1 mRNA downstream 120126 29350078 ~ 29355883 (-) False LOC120559896
XM_039801972.1 mRNA downstream 138411 29323865 ~ 29337598 (-) True LOC120559893
XM_039801390.1 mRNA downstream 295318 29158029 ~ 29180691 (-) True gabrd
XM_039800452.1 mRNA downstream 321784 29150403 ~ 29154225 (-) True LOC120559029
XM_039800615.1 mRNA upstream 100075 29593048 ~ 29609420 (-) True LOC120559132
XM_039800608.1 mRNA upstream 116936 29609909 ~ 29650365 (-) False ttll10
XM_039800607.1 mRNA upstream 116936 29609909 ~ 29622770 (-) False ttll10
XM_039800609.1 mRNA upstream 116936 29609909 ~ 29620791 (-) True ttll10
XM_039800613.1 mRNA upstream 116936 29609909 ~ 29619389 (-) False ttll10
XR_005639350.1 other downstream 1815363 27644783 ~ 27660646 (-) False xpc
XR_005639389.1 other downstream 2277182 27198712 ~ 27198827 (-) True LOC120559934
TU71566 other downstream 2285812 27189076 ~ 27190197 (-) False hyal3
TU71557 other downstream 2304842 27163286 ~ 27171167 (-) False ifrd2
TU71558 other downstream 2304842 27163286 ~ 27171167 (-) False ifrd2
TU72353 other upstream 268101 29761074 ~ 29765873 (-) False cdk11b
TU72358 other upstream 268101 29761074 ~ 29765193 (-) False cdk11b
TU72536 other upstream 478223 29971196 ~ 30065918 (-) False tafa5l
TU72538 other upstream 478223 29971196 ~ 30072699 (-) False tafa5l
XR_005639345.1 other upstream 515269 30008242 ~ 30065941 (-) False tafa5l

Expression Profile