RNA id: XM_039799270.1


Basic Information

Item Value
RNA id XM_039799270.1
length 2535
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC120558334
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 31113760 ~ 31125091 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaagagtgagATACTTATCAGTGGCAAGGTGGAGCCTGCTTATCATTCCTTCACTTGCTTCAGTCACCTGTTGTCACACCTTGGACATCATGCAACAGACGACGTACACCATCTGGGGCACTCACGATAGCCACTGCCGACTGAAGTTAGTCGACTTTTGGGCTAATGAAAACCACATTTCCCATGAGACACAGGGGCTCAGCAAACAGCACCTGGTGGTGCGACGGGGGAAACCTTTCAAACTGACTCTGCTGTTTTTCAGCCGGTCATTGAACCCTCGCACAGAGAGGCTGGTGCTGGATGTTTCGCTAGGCCATCTGTCAGAGAGCTTCCCAGTCCAGTTCTCTGACGAGCAATCCGACCCACAAAGCTGGTCAGCCAAAGTCTACCCAGGCAACATACAGCCTCAGTCAGTCACCATCCACATCTGCTCCCCTGTTCAATCCGCAGTGGCTCTGTATAACCTTGTGGTCCACATAGAGACCATACAGAACAGAAGGAGCTATGCAGTGGGAACATTTGTGCTGCTCTGCAACCCTTGGCTAAAAGATGATCCAGTGTACATGCCACTGGATGCCCAAATAAAAGAGTATGTCAAGAGTGATTACGGGGTGGTTTTTATCGGCACCCATCTAAATGTTAGACAGCGGCCCTGGTCCTTTGGTCAGTATGAGCCTGGGGTCTTAGAGGCATGTCTGAAGCTTCTACAGgtcagcccacagcacctcaggAACAAAGACAAGGACTTCAGTCTACGGGCAGACCCTGTTTACCTCAGCAGGGTGATCTGTGCTATGGTAAACTGTAATGATGACCTGGGTATCTTGGCGGGGAAGTGGCAGGGCAGCTACAAAGATGGTATCAATCCTACAGAGTGGAGCGGCAGCGCCGACATCCTTCACCGGTGGGTCTCGTCCAACTACAGCCCCGTGCGCTATGGACAGTGCTGGGTCTTTGCATCTGTCCTCTGCACAGTGATGAGAGTGCTGGGAATTCCCTCCAGGGTGGTGACAGTTTTTAATGCAGCCCATGATGGAGATGGCAACCTAAACATTGAAGAATGTTACTCCAGCACAGGAGAAAAGCTCAACCTCAACAATAACGACAGCATTTGGAACTTCCATGTGTGGGTGGAGTGCTGGATGAGGAGACCAGACCTCGGTGCAGGGTTTGATGGCTGGCAGGTAGTGGACCCGACCCCCCAGGAGAGAAGTGCAGGGATATTCTGCTGTGGCCCCTGCCCAGTAGCTGCCATCCAGCAACATTGCCTCCGCGCCCCTTATGACACCTCGTTCGTCTATGCCTCTATTGACGCTGACGTCATACGGATGATTGTGCGCAATGGACTGGTGGTGGAGAGGAAGGTGGACACTGAGTGCGTGGGACAGCTGATCTACACAAAGAGCATTGGCTCAGACAGTCCGGAGAATCTGACGCAGACTTACAAGAGCAAGAACAGGGGACAACCAATAGCCACTCTAAGACACTCAGCGAGCAGTGGTCATCAGCGGTCATCTGAGGTCACTCGTGCAGGTTCCTTTTTTGCTTTATCATTCAATGGAAAAGACAGGTATACTGGATATGCTACTCCTCAGCCCAGACAAGTGGATTATGAAGCACGAGGAAGTTCTTCCGGTTTGGATGTATCCCTAAGGATAGATGGGGTGCCATCAGTGGGGGAGAGCATCGTCATGTGTGTGACAGTCAAAAACCAGTCAAGCAGCCCCAGGGTCCTGATGGAACACCTCAACGCTCAGCTTAAGGAGTACAACAGCAACCCACAGGAGAGCTTCTGGAGAGCACGCAATGAAGTGCACATACAGCCGGGTGAAGTTGTGTTGCTCCACCACACCATCCTCCCCTCTGAGTACGAGTCGGTCCTGGCAGCGGATGACATTGTGAACATGGCAGTGGTGATAAAGGACGTGATGACTGAAGAAAGAGCCCTGGCGATGCAGGAGTTCAACTTAAGATCCCTAAAGATAACCATAGAGATCGAAGGAGGGGACAGCATCCAGATAAAGAGGGAGCACAAAGCCCAGGTGTCCTTCATCAACAAACTTTCCAAAACTCTGAATGGAGTTGTGCTGACTGTAGAGGGATCTGGCTTGTTACAGGGCAAACAGGAAGCCAGAATGATTTCCCTGCAGCCAGACATGAAGATAGAGAAGACGGTGTTCATCATGGCAACTTCACCTGGCACTAAACTGCTGATGGCCACTTTATCACACAGCAACAGCGCCAACATGGTGTCCAGGAGCTTCCACAAAGTCTCTGTCATTACTGCATGACACTGAAGAGTCTGTCCTCCCAAGAAGCTTCAGCAACAAGAAATTAATTTCTTTCCACTGAGACATGCAGGAAGTATGCTTCAATATTGTGTtttgatatttgtttttaagaacACATCTCCGGCAAAGATgacatatttgtattttttggtAAAGTCTACAAAGGCAGTCTATATTCAGTAATCCATTTAAaagaatgtactgtatatacttgGTAAAATCCTACAATATTCCTGTATTTTA

Function

GO:

id name namespace
GO:0046930 pore complex cellular_component
GO:0098796 membrane protein complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72835 lncRNA downstream 15575 31097980 ~ 31098185 (-) True G54509
TU72834 lncRNA downstream 48788 31064741 ~ 31064972 (-) True G54508
TU72791 lncRNA downstream 224542 30889018 ~ 30889218 (-) True G54470
TU72754 lncRNA downstream 327963 30785093 ~ 30785797 (-) True G54444
TU72718 lncRNA downstream 406999 30655670 ~ 30706761 (-) False G54414
TU72888 lncRNA upstream 110156 31235247 ~ 31235474 (-) True G54549
TU72910 lncRNA upstream 222190 31347281 ~ 31350577 (-) True G54567
TU72945 lncRNA upstream 366465 31491556 ~ 31527860 (-) True G54599
TU72947 lncRNA upstream 373686 31498777 ~ 31500889 (-) True G54600
TU72956 lncRNA upstream 498030 31623121 ~ 31623330 (-) True G54609
XM_039801205.1 mRNA downstream 56184 30988074 ~ 31057576 (-) True ctnnbl1
XM_039800564.1 mRNA downstream 132584 30928243 ~ 30981176 (-) True LOC120559110
XM_039800561.1 mRNA downstream 210852 30897279 ~ 30902908 (-) True zgpat
XM_039800562.1 mRNA downstream 211733 30896977 ~ 30902027 (-) False zgpat
XM_039801572.1 mRNA downstream 454868 30650112 ~ 30658892 (-) True tmco4
XM_039801623.1 mRNA upstream 3137 31128228 ~ 31141874 (-) True e2f1
XM_039800310.1 mRNA upstream 37428 31162519 ~ 31191356 (-) False itchb
XM_039800311.1 mRNA upstream 37428 31162519 ~ 31190858 (-) True itchb
XM_039801985.1 mRNA upstream 340677 31465768 ~ 31469785 (-) False LOC120559902
XM_039801984.1 mRNA upstream 340677 31465768 ~ 31469785 (-) True LOC120559902
TU72538 other downstream 1041061 29971196 ~ 30072699 (-) False tafa5l
XR_005639345.1 other downstream 1047819 30008242 ~ 30065941 (-) False tafa5l
XR_005639344.1 other downstream 1047819 30008242 ~ 30065941 (-) True tafa5l
XR_005639347.1 other downstream 1047820 30008242 ~ 30065940 (-) False tafa5l
XR_005639346.1 other downstream 1047820 30008242 ~ 30065940 (-) False tafa5l
unassigned_transcript_235 other upstream 101969 31227060 ~ 31227131 (-) True trnaq-uug_1
TU73035 other upstream 1181831 32306922 ~ 32312778 (-) False LOC120558955
TU73036 other upstream 1191869 32316960 ~ 32321952 (-) False LOC120558955
TU73146 other upstream 1642266 32767357 ~ 32773486 (-) True G54756
TU73247 other upstream 1755102 32880193 ~ 32887290 (-) True G54834

Expression Profile