RNA id: XM_039799272.1


Basic Information

Item Value
RNA id XM_039799272.1
length 2207
RNA type mRNA
GC content 0.48
exon number 13
gene id si:ch211-220i18.4
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 32570308 ~ 32586963 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATCTTGTAGTGCCTCTGATCTCTGTCATGGCTCTCCCACAGTAGCAGACAAAGAGAAATCGAGGAatagagagatacagagagacaccAACTGTAAGATCAGCGAAAGACATAAATGACATAAAGGCCTGGCAGCGGCAGCGAATGAGGAGGCTGCTGGGGATTTCCATGTTTAGACCCTGCTGACTACTGCTGCTGGCGTTCCCAGCCTCCTGAGAGAGCTACAGTACCGggaccacccccaccccccttacCTCTCAGCTGCTCGACTGTTTTCAAGTGGTGAAACATTAAAGGCTACATCTGTTGAACAATGCACACCATGCAGAGGAGTCCCCGCTCCGCCACGGATATAGCTGCTCAGCAGAATCACACgagcgAAGCAAAGTCGTCTAATAACTTTGAGGCCCTAGGATGCCATGAGCAGCTGGATCCAAAGGACAGCCAGGACTCTGAGGACCCCAGAGAATACTGTTATGGTGGATACCACCCTGTCCAGATAGGTGACACCTTCAACAGAAGATACCAGGTGGTGTCCAAGCTGGGTTGGGGCTATTTCTCCACTGTCTGGCTGTGTCTGGACCTCAGGCTAGGGCGGCGCATTGCTGTGAAGGTGCTGAAGAGCGGAGCTGGCTTCACCCAGGCAGGACAGGATGAACTTGCTCTCCTACGATGCGCTAGTGGTCCTACGAGCCGGCATCCCTCCAGTCAAAGGATCGTACAGCTGCTAGATGAGTTCAAGCTGGCCGGGGTCAACGGGGTCCACATGTGCCTGGTGCTGGAGCTGTTGGGGCCTGACCTGAGAGAATGGCAGCTATGTTTTGGAAATCCTGGACTGACACGGCCTTCAGTCAAACACATACTAACTCAGGTTCTGCAGGGCCTGGACTATCTTCATGCTCAGTGTAAAATCATCCACACAGACATCAAGCCTGAGAACATCCTGCTGTGCCTGGAGGAGCAGTTCCACAAAGTACCAGCAGGGGACAGCAACCCTTCCTCTCTACTGACTAGGAAAGAGGCCAATTCCATagAGAAGGAGCAATTGAACCCACACAGTTTAAAGGAAATTACAGTGAAGATTGCTGACCTGGGCAGCTCCTGCTGGGTGTACAAACATTTCTGTGAGGAGATTCAGACTCGTCAGTATCGCTCACTGGAGGTTTTACTGGGATCTGAGTACGGCCCGCCTGCTGACATCTGGAGTGTCGCCTGCATGGCCTTTGAGTTGCTCACTGGAGACTCCCTGTTTGAACCCAAAGCTGGCGAGTCCATTTCCCTGGAGGAAGACCATATAGCCCAGATCATGGAGTTGCTTGGTAAAATCCCACCAGATGTTGCCTTCTCGGGTAAATACTCTGCCGAGTACTTCAGTCGCAGAGGTGACCTTCGTCGTGTCGGTCCACTGAGGTTCTGGAGACTCTACGATGTTCTGGTGGAGAAATACCACTTCTTCTTGGAGGACGCCACTGGTTTCTCAGACTTCCTTCTTCGCATGTTGGATTACCATCCGGAGAGGAGGGCCACTGCTGCACAGTGCCTCCGCCACCCATGGCTGACCTCCTGATAGCCTCCAAAGGCCTTACAGGCCTCGTCACCATCTGCAGTCCTCACAACCAGATGCTGTCAGCAGCTCGACCTGGCCAATTTCTGAACATACCAGCCTTAAATTCAATCAGTCAGATGTTGAGTTTTTTTATACTACGAGGAGCTATATAGAAGACTGTTTGTATTTCCCTCAATGATTTGTAAATTCCCGTAGAATGTGCTGTTGTCCTTATTCAACACCAGATCGAGAATAGGATGCACTTTTCCACATGATAACTTTGCTACTAAACTTAAACTACAACTTAAACTTTCCTCCAGGGAAAGCTGATTGTAACCTTTTACCACTGCAAAAAGCCAGATGTTAGTGGGTGTAAGTGGTTTTTTTGGCCAGTGAAAAGGGGTATAAGTAGCATCGGTTTTGAAGAGGATATAATTCTGTATTGTCTCTTGCTACACTGAAAGGGAAGTTGCCAATTTGACTAAAATTTTGATTACAGCTATTATTCATTGTGAATGTTAATAATTAAAATGATAAATGTAAACATTATTGGCTTTACATTGTATGTACTTTAAAGttgcttttctttctgtttaCCTTTTGTACAGTGTAATGTGCAGCCAGATTAATTGCAGTGCAAATATACAGTAAGTCACGTTAA

Function

GO: NA

KEGG:

id description
K08832 SRPK3, STK23; serine/threonine-protein kinase SRPK3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73048 lncRNA downstream 160456 32409506 ~ 32409852 (-) True G54684
TU72980 lncRNA downstream 571236 31998533 ~ 31999072 (-) True G54631
TU72978 lncRNA downstream 577757 31992349 ~ 31992551 (-) True G54629
TU72966 lncRNA downstream 626043 31941687 ~ 31944265 (-) True G54618
TU72956 lncRNA downstream 946978 31623121 ~ 31623330 (-) True G54609
TU73095 lncRNA upstream 4020 32590983 ~ 32592616 (-) False LOC120559593
TU73097 lncRNA upstream 9609 32596572 ~ 32597493 (-) True G54724
TU73104 lncRNA upstream 88302 32675265 ~ 32675465 (-) True G54731
TU73106 lncRNA upstream 95199 32682162 ~ 32682516 (-) True G54733
TU73107 lncRNA upstream 96397 32683360 ~ 32686614 (-) True G54734
XM_039801739.1 mRNA downstream 59243 32413064 ~ 32511065 (-) True cpne9
XM_039801011.1 mRNA downstream 177765 32381926 ~ 32392543 (-) True LOC120559355
XM_039801012.1 mRNA downstream 179850 32381884 ~ 32390458 (-) False LOC120559355
XM_039800342.1 mRNA downstream 248485 32292942 ~ 32321823 (-) False LOC120558955
XM_039801426.1 mRNA upstream 5575 32592538 ~ 32666459 (-) False LOC120559593
XM_039801424.1 mRNA upstream 5575 32592538 ~ 32666428 (-) False LOC120559593
XM_039801425.1 mRNA upstream 5575 32592538 ~ 32666428 (-) True LOC120559593
XM_039799643.1 mRNA upstream 101924 32688887 ~ 32694442 (-) True LOC120558593
XM_039799644.1 mRNA upstream 133870 32720833 ~ 32726627 (-) True krt8
TU73036 other downstream 248356 32316960 ~ 32321952 (-) False LOC120558955
TU73035 other downstream 257530 32306922 ~ 32312778 (-) False LOC120558955
unassigned_transcript_235 other downstream 1343177 31227060 ~ 31227131 (-) True trnaq-uug_1
XR_005639347.1 other downstream 2504368 30008242 ~ 30065940 (-) False tafa5l
TU73146 other upstream 180394 32767357 ~ 32773486 (-) True G54756
TU73247 other upstream 293230 32880193 ~ 32887290 (-) True G54834
TU73607 other upstream 1437055 34024018 ~ 34127495 (-) False G55124
TU73620 other upstream 1501007 34087970 ~ 34093118 (-) True G55131
TU73610 other upstream 1530941 34117904 ~ 34127495 (-) False G55124

Expression Profile