RNA id: XM_039799297.1


Basic Information

Item Value
RNA id XM_039799297.1
length 1742
RNA type mRNA
GC content 0.50
exon number 4
gene id si:dkeyp-110g5.4
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 36599573 ~ 36606768 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCGCAACCTCCATCTCAGTTCGTTCGTAATTTTTTAGGAAACGTTAGCGTTACCTAGTAACTAATGAATATCGAAAGTCTGAGCAAATGGTGTCTGTTAAAAACGTAATGGACGTCAGGAACGACACCGCTACATTATCTTCTAGATAGAGAAACATTAACATTGTATGTGACTTTATTTAAACCGTTAAGCCGTTGAAACCAGGACCCAGGAGGGGCGAACTTTAGTGTCCGTTAAGATTTCTTTCCGCTCAGGAAATACACAGAGCATGGATCTCcttggaaaagtggaaatctACATCCCAGTGGACGCTGAGGTGAAAATATTCCCTATGTGGAGTTTACCTAAATCGGTGCTTAAACGAATTGGCCTCCCCCTGTCTGACTCTGAGGGCTCCGGGACGCTCGCAAACTCTCCAGAAGGCATATGTATTTGTCCAGCAATCATACGGAGGAAAGGCCAGAAACTTGTCTCCCACACAGGAAACGGTGGGACAGAAAACACATCGCTGCTGCACACAGAGTTTCGGTCCGGACAGATGTCCTTTGTCTGCCCCAACCGCACAGCTTACAAGGTGCTAAAGGACACCGTGCCTGGGAAAAAGGTCTCTGCGCACACATCTCACACCTCCCAGTTACCTCAGGGCTCTGCGCCGGATAAGTACAAAGATGCCGTCGTCATCTACCATGGACATGTTTACCTGTCCACCAGGAGGTCCAATCACAGCCGGAGTCAACGAGGGACACGTCAACCAAAGCCATCTTCCCACTCCGCCATTCCTAAAAGTTTAAAGAAGCGGCGGTCTCCCCAGGCTCGCCATGATCCTGCAGACAAAGAACTACGAAGGAAGAAATTGCGTGTCACTTTGCCCCAAACCTCCATAAAACCGCTACAGGATCTTCTCACCAAAACAGATAATAACTCCACCACGGACCAGGAGCTGCTACATGACAACATGCCCGAAAAAAACCCCACCGCTTGCAAAGTAACACACGGTGAACACGAGAAGGATGTTTTTACGCACAAGACCGTTGACGTGTCGTCATCCACAGCTGCACGTTCGGATGCCGATGGAGAGCAGGCAGCGGCGGAGGAAGCAGCCGAGCCGGTGTGGTTTCAGcctcaggaggaggaggaggaggaggagcagcagcagcagcaggaggaggtggaggaggtggaggaggaggagtccaACGACGACGGGGCTGAACGTGAGCTACGGGACCAGAATGACGAAGAAGCTAAAGCTGACTATCTACAAATTGACAACGTTGGTGATATTGTGGAGCAGAGTAGCAGCCAGAGCTGGATCGGGAGAGAGTCTCGGGGTGCGGCTCGCGCCTCCACATCGCTGCAGGAGGAGTACGACTTTAAGGAGCTGGCGGAGGAGGAGAAGATCGCTAGAATGAAGGCCAAACTCAGACAGAGCGAAGCTGCCCTCCTTATAATGACAGCTCAGTCCGAGTGAGCAACAGTTCCCTAAACATTCAACTCACGTTAAGATTTTTACCCTTGAACTATGGCTGCTCAGTCCAGAGTGAGAAAAGAACCCCAGCAATGATGCTTTAGATCCCTAAACATTAAACTTACGATAACTAACATCAAAGCTAACTCACggtaaaggacaaatccggcgcaaaatgaacctaggggttaataataGAGATGGcctgataccattttttgcttcctgataccgattccaatacctgaacttgcgtatcggccgataccgagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74361 lncRNA downstream 1301 36594225 ~ 36598272 (-) True G55662
TU74363 lncRNA downstream 3748 36593238 ~ 36595825 (-) True G55664
TU74371 lncRNA downstream 47686 36544954 ~ 36551887 (-) True G55670
TU74365 lncRNA downstream 56938 36540534 ~ 36542635 (-) True G55666
TU74354 lncRNA downstream 87915 36511359 ~ 36511658 (-) True G55658
TU75208 lncRNA upstream 8035 36614577 ~ 36615851 (-) True G56162
TU75214 lncRNA upstream 51347 36657889 ~ 36699601 (-) True G56167
TU75191 lncRNA upstream 77098 36683640 ~ 36685282 (-) False G56155
TU75190 lncRNA upstream 102094 36708636 ~ 36712643 (-) True G56155
TU75237 lncRNA upstream 145903 36752445 ~ 36752701 (-) True G56190
XM_039799312.1 mRNA downstream 10861 36581523 ~ 36588712 (-) True igf3
XM_039801025.1 mRNA downstream 39641 36557530 ~ 36559932 (-) True LOC120559361
XM_039800545.1 mRNA downstream 242062 36275542 ~ 36357511 (-) False plch2a
XM_039801622.1 mRNA upstream 3595 36610137 ~ 36625969 (-) True lrif1
XM_039801554.1 mRNA upstream 116696 36723238 ~ 36744131 (-) True LOC120559655
XM_039800296.1 mRNA upstream 173759 36780301 ~ 36804670 (-) True stk35
XM_039800964.1 mRNA upstream 244308 36850850 ~ 36866302 (-) True gmeb2
XM_039799935.1 mRNA upstream 278261 36884803 ~ 36895540 (-) False rhoaa
XR_005639240.1 other downstream 39614 36559389 ~ 36559959 (-) False LOC120559361
XR_005639221.1 other downstream 700837 35887101 ~ 35898736 (-) False si:ch73-70k4.1
TU74116 other downstream 1189807 35404604 ~ 35409766 (-) True G55492
XR_005639224.1 other downstream 1321719 35269900 ~ 35277854 (-) False LOC120559165
TU75206 other upstream 75357 36681899 ~ 36724209 (-) True G56160
XR_005639341.1 other upstream 120054 36726596 ~ 36744132 (-) False LOC120559655
TU75262 other upstream 278323 36884865 ~ 36895490 (-) False rhoaa
TU75263 other upstream 278323 36884865 ~ 36895490 (-) False rhoaa
TU75311 other upstream 382243 36988785 ~ 37001151 (-) False phc2a

Expression Profile