RNA id: XM_039799304.1


Basic Information

Item Value
RNA id XM_039799304.1
length 6275
RNA type mRNA
GC content 0.45
exon number 17
gene id clstn1
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23849614 ~ 23890973 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCGGTGATTGAAGGGGATAGCAGAGCGGCGGCGGCGACGGCCATCTTAGAGCTACCGTGGTAACCACTCATCttctggattttctttttctttttggaaaAACATTCTGCCTGACTGACGAGGGAAGaagaaggttgtttttttttttacttcgcCGCGGTTGAACTCGAAGTCGGGATGCGGTTCCGTGGGAATACACAATTTGCATCCGCTGTCGGACTGGTCCTCGGACTATTATGTGCGGTGGAGGCAGCTAAAGTCAATAAGCACAAACCATGGATCGAGACGACGTACCACGGGATCGTAACGGAAAACGATGACAAAGTACTTCTGGACCCTCCTCTAATTGCACTGGACAAGGATGCTCCTCTACGCTACGCAGGTGAGATTTGCGGCTTCAGGATCCATGGGCAGAATGTCCCCTTCGAGGCAGTGGTCCTGGACAAGTCCACTGGCGAGGGGGTCATCCGGGCCAAGGACAAGCTGGACTGCGAGCTGCAGAAGGAGCACACCTTCACCATCCAAGCCTATGACTGTGGAGAGGGTCCTGATGGTGCCAACATGAAGAAATCCCACAAGGCCACTGTCCACATTCAGGTGAATGACATCAATGAGTATTCGCCAGTGTTCAAGGAGAAGTCCTACAAAGCCACCGTTATCGAGGGAAAGAAGTATGACAGCATCCTGAAGGTGGAGGCAGTGGACGCCGATTGCTCTTTCCAGTTTAGCCAAATCTGCAACTACGAGATTGTCACCCCTGATGTGCCCTTCACCATCGACAAAGATGGATTCATCAAGAACACCGAGAAACTGAGCTACGGCAAAGAGCACATGTACAAGCTGACCGTGACCGCCTACGACTGTGGAAAGAACCGTGCCTCCGAGGACGTTCTGGTCAAGATCAGCGTCAAGCCCACCTGCAAACCCAGCTGGCAAGGTTTCAATAAGAGGATTGAATACGAGCCTGGCACAGGTAGCCTGGCCCTTTTCCCCAGCATGCACTTGGAGACCTGTGATGAGCCAATCACATCCATCCGAGCCAACATTGAACTGGAAACCAACCATATTGGGAAGGGCTGCGACCGTGATACCTACTCTGAGAAGTCACTGCACAAGCTGTGCGGAGCCAGCTCCGGCACCGTGGAGCTTCTGCCTACACCCAGCAGCTCCGCCAACTGGACAGTAGGGCTGCCTACCGATAACGGGCATGACAGTGACCAGGTGTTTGAGTTCAATGGCACCCAGGCCATCAAGGTTCCTGATGGCATGGTGAGCACCAGCCTAAAGGAGCCCTTCACCATCTCTGTGTGGATGAGACATGGCCCCGGGGCCCATGAGAAGGAGACCATCCTCTGCAACTCTGACAAGACAGAGATGAACAGACACCACTACTCGCTGTATGTCCACAACTGCAGGCTGATCCTCCTCCTCCGTCAGGATCCATCAGAGGCTGAGAACTACAAACCAGCCGAGTTTCACTGGAAACTTGATCAGGCGTGTGACAAAGAGTGGCATCACTATGTGCTGAATGTGGAGTTGCCcactgtgtctctgtttgtggatGGAACTACCTTTGAGCCCTTCCTGGTTACAGAGGACTACCCGCTGCACTCCTCCAAGATCGAAACTCAGCTCACCATTGGTGCCTGCTGGCAAGGTGGAAATGCTCGAATGGCCCAGTTTTTCCGAGGGAACCTAGCGGGGCTGATGATCCGCTCTGGCAAGCTGGAGAACAAGAAGGTGATTGACTGTTTGTACACCTGCAAGGAAGGACTGGACGTGCAGCTGCCGGAGGAGGTAGCTTCAGCTGTCAAGGTTGAGTTCAACCCCAACCAGTCCTCTCTGACCGTGGAGGGCGACGACATTGATGCCTTTGACAAAGTCATGCAGCACATCTCCTACTTGAATTCCCGCCAGTTCCCGACCCCTGGCATCAGGCACCTTCGCATCTCCACCACTGTCAAATGCTTCAACGAGGAGTCCTGCGTAACCGTGCCAGATGCCGAAGGTTAtgtgatggtgctgcagcccgAAGAGCCCAAGATCAGCCTGAGCGGCATCGACCACTTTGCTCGCAGCGCTGCCGAATTTGAGAGCCAGGAAGGTGTGACGCTGTTTCCCGAGCTACGCATCGTGAGCACCATCACACGCGAAGTGGAGGCCGACACAGAGTCTGAAGCGACAGAGGGAGCTGATGATGACCCTACGGTCCAAGAGACAGTGGTGTCAGAAGAGATCATGCACAACCTGGACACATGTGAAGTGACTGTGGTGGGAGACGAGCTGGACGGGGAGCACGAGGGCCTGGAGGTGGACATGTCCCAGCTGCAGCAGCATAGCCTGGAGATGAGTTCCTCTAACCTGGGTCTCGTCATCACCGGTGTGAACACCATGGCCAACTACGAGCAGGTCCTGCATCTTATCCGTTACAAGAACTGGCACACCGAGGCTCTCTTTGACAGGAAATTCAAACTGGTCTGCTCCGAACTCAACGGTCGCTACATCAGCAATGACTTCAAGGTCGAGGTGAATGTAATCCACACAGCCAATCCTGTGGAGCATGCCAACAATGCCATGGTGCAGCCCAACTTCATTAACCCTGTGCATCACGCCTCTGTGGATCTGTCCGGTCACAACCTGGTCAACGCTCACCAGGCCTCAGTTGTTCCCAGCGCTGCCACCATTGTCATTGTGGTGTGTGTTAGCTTCCTGGTGTTTATGATCATCCTGGGCGTGTTCCGCATCCGAGCCGCACACCAGAGCACCATGAGTGACCAGGAGAACGGCAAGGAGAACGAGATGGACTGGGACGACTCAGCCCTCACCATCACCGTCAACCCCATGGAGACGTACGAGGACCAGCACAgcagcgaggaggaggaggaagaggaggaggagagcgaggatggagaggaggaagatgacATCACGAGCGCTGAGTCAGAGAGCAGTGAAGACGAGGAGGGCGCAGAGCCAGAGGACAAGCAGGGGGCCAGCAGACAGCAGCAGCTGGAGTGGGACGACTCCACCCTCACctactaaaacacacacaaacacacacacacacacacacacaacacacacacacacacacacacacacactcactcactcaacacaagctcacacacacacaacaccaactCACACTTACTCAGATCCTCATACTCACTGTTCCACACAgactcccccctccccccccctacAAGGAGCCatgatgtaaaaaaataaatacaaaaaagcaaaacaaaaattccCTGTAGCGTATATATGGTCAAGGATTTCCTGTTGTTATCTTAGTGGTGGTACTTAGTGTAGTGTAGTCATCACCGGATTGCTGATTTTTaccgtttatttttttatttattatattttaattccCAGGAAAACTTGGCCTACATTTGTTCTGAACTGATTGAGGCAGCCAACCCtgcacttttttgttttctcagatgttatgcttttaaatggagacttttttttttatgtatattctTTGCTTACTGCTTTTAGATTTGTTTGCAGCTAATCTCACGTATAACTTTGACATGAGTTTTCTTGACTTGTAGTCCACAGTGAAACAAAACAATGCTTTTAACAAGTAgacagcattttcttttttttttcttcttttagtgCATGAGGATATTTGAGAAGTCATATGTGTAGAGAAATGAATtgctttttaaagattttgtaAATATAAAGAAACCATGTAATTAGTCAATGTGTTAGTGAAGGCCTACTCAACAGGGTCCAATATCTAAAATGACGCAGTTCGTAATATTTGTGTCACACAGGCTGTAGCATGTCGCTAAATTTCTGCAAATGCTGTTCCATCATGCTTGTACATGTCTGCTTCATAATAAGAAACCCTAACTGTTAAGTGGAGGTTTCTATGACAAAGTGGTGtccattttgtctttttcttttttgcaaagAGGAATCATTTCTTTTGCTTTCTCGCAGGTGGATGGTTTCAGCTTCATACATTGCTTTGCTTGCACAGGTAGCAATGCTCTACTCCAgacatctgtgtttttcattCCCAATGGATCTCACTGTTGTACAGaagggattttctttttgttcagAGTAATCATACCCAGAGAAATGCTTATGTACAAATCGACATTTCGTGTGAAACGGTACAAACACTAGGCCAGCAGGTACTGTAGTGCTGTTGATCTTGAAATATGGGTACTAAAGTAAAGGGTACTACTTTTTGCCAGTTTATTTTGGATAAGTAGAGAGATTTCCTCAGCAGCTTTAAAAGTCTTTTGTCCGTATCCCAGTCCTGCTGTGCTGACAGAAGTAGGGAGGTAAACACCTTTCAAACTACTGAAAGAGCAGATTTATGGCAGACAGAGCTTTAGTGGAGCCTGGTTGAATAGTGCACTTGCTGGCATTGTTTTGGGGAAGAGTAATGAAATGAAAGTACTTTTCAGGATTGCTTTGTTGCAAGTTAAATTTCCACGGCACGGCTATTTAAATCTGAAATAATAAACCATATGTTACATGCATTTTTAAACTGGTTTCCTGTTGCAAAATATGCACCGTCTTTATTGTAGTTTAAGGTATTACAACTGAAGTTATGACTGCATATAGCTTACAAAaggaaaacactttaaaaaagaatCTTCTTGTTTGTTCaatgaaatatttgtttgcCGTATACCACTAGATTTTATTGTACATGGAACTGTACTGTAGAGTTGTTctaaaatatttgtttacatttggtAAACTTATTTTCCTTCTGGTGTTAGTATAAAGCTTATACAATTGATTGGGAAAATGTGTCCAAGCTCTATCTCCTCTCAGACACTGTTGTCCATCACTGTTGTATATATCTTTCACAAAACCAGATACAAATGTACCTTCACACTTAACTATTTAGTGTTTGTCTCATGTTTTTGGGTACCAAGttaaaatgttaacatttcCCAAACCTGCGTTAGCCTAATTAAAGCAGATCAGATTTTGGGCATTGAAGTTAACAGAACATGGCATTATTGAAATTAGAAATGTCAGTGTTTTGAGCCTCACGTTTTGCATGCAAATCAAATTTTAGATGCCCAAACTGAAACATTGGAGACAATTTCCAGGCTACTTTTGAGGGTTTAAGTCGTTGTGTTTCTTAAGTTTGATTGATTTATAATTTTAAGAGGTTGGTGGTGGAAATGTAGTGAACAGTCTCCCCTCAATGATGACTTGGACTTTTAAAAAGTGGGCCAGGTCTGAGCCGGCTGAGATGGGAGTGCCTTTTTTCCGATCATAGCGCAATTAGCAGGTCTAACAAAAACACTCATCCGTGCTCTTTTATTCGTGgcaatttttgtttgttttttatttgtatttgtctaGATTTCTTACAGAGCGTAACAATAGTCCACTGCTAGTTTTATTAAAAGTGAAAAACGTTTTACATAGATGTCATGTGTCCATGTTGATGTGTAGATGAAGTAGATCCATATTGTATCTTCTATAGATATTATACTAAATCATTGACAAAATCCACCTTTAAaaagatgtacagtacattatGAAATTGCTTTGGcagcatacatacagtatatatgtatactgtTAACTGACCTATTTGTGTATAGTGGAAGGTAATTTTGAACAGTGTCCTATTGCCTGAGTTGTTGAGAAATGATTTTGAGGGCAGCATGAAATTCACAAGAACCAGAGTATAAGCCTGTCCAAATTCTCCGTTTCATTACGTCAAACACTTAATGTCCACATTTCATCAACAGTACAATACCATGGGTCACTGATATGTGCACACTGACTCTTAAGTCACGTCTCCACAGTGACTGCACCATCTCCAGTTTTCTGGATTTAATGCTTTCTGATCATCCCCCTAGCTAAGTGTAAGTTGGTTGAATTGAATGTCACTGCCTAACAAACTGAAATGCAGCCATACTGTAATAACACTAAGATTTAGGGGAATTTACTTTGCATGAACCACAAGTTTGTGTACGTTCCATGTGGGGTTgtgagactggagagagagaagagacggGATACACTACTGATTCTCAGATCGTCTGTTTCACAAGTCCACAACACtccagatatatattttttttcttttcttttaaaaatgtgctCAAAATGGAAAAGGGTGACAATGTTTTCCGAACGGTTGAATGCTTCCTTTGTGCTTGTTGGAGCTGCTCTCACTTTTCTACTAACTGAAAGGCAAATTGTAGTGAAGTTGATGCTTGCTCGTAAACAAAATAAAGGATGATGAGATGGGGTATAA

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70245 lncRNA upstream 11653 23837692 ~ 23837962 (+) True G52611
TU70231 lncRNA upstream 35209 23814132 ~ 23814406 (+) False ctnnbip1
TU70233 lncRNA upstream 48747 23791479 ~ 23800868 (+) False ctnnbip1
TU70232 lncRNA upstream 59093 23789448 ~ 23790522 (+) True G52604
TU70181 lncRNA upstream 162254 23686438 ~ 23687361 (+) True G52569
TU70294 lncRNA downstream 118823 24009796 ~ 24011101 (+) True G52628
TU70296 lncRNA downstream 121990 24012963 ~ 24013301 (+) True G52629
TU70381 lncRNA downstream 170090 24061063 ~ 24073977 (+) False LOC120558580
XR_005639153.1 lncRNA downstream 170119 24061092 ~ 24074008 (+) True LOC120558580
TU70416 lncRNA downstream 379148 24270121 ~ 24274036 (+) True G52728
XM_039801523.1 mRNA upstream 35209 23791447 ~ 23814406 (+) True ctnnbip1
XM_039801840.1 mRNA upstream 60522 23770631 ~ 23789093 (+) True pik3cd
XM_039801841.1 mRNA upstream 60522 23770631 ~ 23789093 (+) False pik3cd
XM_039800770.1 mRNA upstream 84450 23746365 ~ 23765165 (+) True tmem201
XM_039799306.1 mRNA downstream 3240 23894213 ~ 23904039 (+) False nmnat1
XM_039799305.1 mRNA downstream 3241 23894214 ~ 23900465 (+) True nmnat1
XM_039799307.1 mRNA downstream 3242 23894215 ~ 23900465 (+) False nmnat1
XM_039799310.1 mRNA downstream 12992 23903965 ~ 23905818 (+) True rbp7a
XM_039800725.1 mRNA downstream 15927 23906900 ~ 23927466 (+) True ube4b
TU70197 other upstream 84462 23759234 ~ 23765153 (+) False tmem201
TU69870 other upstream 1002677 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 1287094 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 1289287 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 1754725 22093905 ~ 22094890 (+) False LOC120558641
TU70648 other downstream 1062469 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 1852637 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 2180612 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 2461487 26352460 ~ 26353463 (+) True G53232
XR_005639211.1 other downstream 2488703 26379676 ~ 26382295 (+) True LOC120559113

Expression Profile