RNA id: XM_039799333.1


Basic Information

Item Value
RNA id XM_039799333.1
length 1604
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC120558363
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 41897815 ~ 41902768 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAATATAAGAATTGGatagtaaaaaatatttatctcGGAGGCAACATTGAATGTTGATTTTTGAAAAGAGGGAGTTCACACATGCGCAgtggctgcagcagcagcagcagcagcactttgCTTCTCCCAACCGTCACTGCTGCACCTGGCGCGAAAACCCGAGAACAATGGAGCTGTCAACGGAGGAGCTGCTCCAGAAGTTAACAGAGTCAGGGATTATACTGACGGAAGAAGAGACACAGAGATTCAGAGACAATGACGTGGATGGAGAGACAGTACAGTGCGGCTTGACTGAACATATGGTGGCATTCCTTTTTTCTGgttcatttaaaaagcaactTAAATTCAACACATTTGTACAGGAGCTGAAGGATGTAACACTGACTTTAGTACCAGTGCCAGATGTTAACACTGAGCAACCTTTGACAACAGACAGAAACGAGGCAAGTGGCAGACTGCCTCTTGGTTTTGTTATTCCTCCTTTCCCTAGAGATCTTCAGACCAGACTTGACAAAAGGGAAGCATGTCAGAAGTCCAGCAAAGATCGACATACGATCATTCGTGTTCTGCATGAAGCAGTTATAGAACACACAATGTATCCCAACAATGCGGAATATGTGCAAGTAGTTAGAGCACTTATTGTGAAGTATCCTTTTCTTAAGGATCTGGAGGGAAACGGCTATCATACCTGGCATCAGTCACTTAAACGCAAATTCAAAGCAGAGCGTGCCCCTTTGATTCATGAAGACGAAGTGAAAAGGAGTAAAGAGAAGTTTGGTCACAAGAGAGCCAGAGAGTCTACAGAAGCGGCAAGAGCCTGTTGCAGATCTGTGTCACGAGTACCTGCTGTGATTGGTGAGGACGCGTCTTCTATTGAGAGGCATGTGCAAGTCCTACATATGCAGTATGAGAAGATGACACCTGACGCCTCTGTGGTCAACGACCGCATGCAGCGAACTTTTGCATGGCGAAGAAAGGAGATCGCAGATGGCATGGCAGTGGAGGACGTATTAAAGAAATACCCTTTCCTAAGAACACCCACAGGGTTGTGCGATGAGGTTGACAGGATCCATCCATCTACGGTGAACTTGTACAGACGCTGGAAAGAGGGATTCACTGGCATAGTGCCTAAGGTGGTCAAGCTGGTGCAAGGAAAATCCCCATTAGCCAAGATGTACACCGAAGCAAGGGAGGAAATGCTGACAGAAGATCTACCAGACGTTGACCTCCGTGCTGCGCTGATCCTGTTGCCTCACATCTTTAAAGAGAAGGTTGACCGGTTCATTACATTGGGACAGTATGACGCTCAAAGTCCCTATCCAACTGTACAGTTGGTAGACACTGACTGGAAGATGGCCTTTACCAGGAAGGTTCCGGTTACGGTCAAAGTGGACGGCGTGGATCTGTGCAGGGGAACAGGAGTTGAGGATGGGGTAATAGCCGCCTTCTGTACCTACTTTGTTTTCGACATGGCTTACCCACCCTACATGAAGAATACCTTGTCCTTTCTTCAACGTACACTACTGAACATTACTGTGGTGGGTGAAAAGCCCCTTCCAGTCACTGTGACTCGAATGATCAATCTACTATACTAAATATGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76924 lncRNA downstream 124382 41621522 ~ 41773433 (-) False G57271
TU76921 lncRNA downstream 124382 41679275 ~ 41773433 (-) True G57271
TU76923 lncRNA downstream 125394 41660447 ~ 41772421 (-) False G57271
XR_005639372.1 lncRNA downstream 139156 41757542 ~ 41758659 (-) True LOC120559836
TU76907 lncRNA downstream 178917 41716870 ~ 41718898 (-) True LOC120559079
TU77317 lncRNA upstream 190677 42093445 ~ 42093735 (-) True G57533
TU77318 lncRNA upstream 190677 42093445 ~ 42093777 (-) False G57533
TU77336 lncRNA upstream 267924 42170692 ~ 42175743 (-) True G57544
TU77338 lncRNA upstream 277415 42180183 ~ 42180507 (-) True G57546
TU77335 lncRNA upstream 278958 42181726 ~ 42182319 (-) True G57543
XM_039800501.1 mRNA downstream 166014 41718017 ~ 41731801 (-) False LOC120559079
XM_039799676.1 mRNA downstream 190469 41296080 ~ 41707346 (-) False LOC120558615
XM_039799675.1 mRNA downstream 190469 41296080 ~ 41707346 (-) True LOC120558615
XM_039799687.1 mRNA downstream 336180 41548861 ~ 41561635 (-) True LOC120558622
XM_039799679.1 mRNA downstream 375526 41516985 ~ 41522289 (-) True LOC120558618
XM_039799590.1 mRNA upstream 2262 41905030 ~ 41918739 (-) False LOC120558546
XM_039799589.1 mRNA upstream 11108 41913876 ~ 41918743 (-) False LOC120558546
XM_039799611.1 mRNA upstream 214976 42117744 ~ 42121471 (-) True LOC120558562
XM_039799608.1 mRNA upstream 225475 42128243 ~ 42134657 (-) False LOC120558559
XM_039800502.1 mRNA upstream 271222 42173990 ~ 42185728 (-) True LOC120559080
TU76906 other downstream 166039 41728043 ~ 41731776 (-) False LOC120559079
TU76761 other downstream 766345 41130882 ~ 41131470 (-) True G57146
TU76730 other downstream 819065 41020480 ~ 41078750 (-) False G57134
TU76729 other downstream 819065 41070363 ~ 41078750 (-) True G57134
unassigned_transcript_240 other downstream 946220 40951523 ~ 40951595 (-) True trnak-uuu_11
XR_005639137.1 other upstream 1372 41904140 ~ 41918741 (-) True LOC120558546
XR_005639139.1 other upstream 1372 41904140 ~ 41918739 (-) False LOC120558546
XR_005639138.1 other upstream 2262 41905030 ~ 41918741 (-) False LOC120558546
XR_005639141.1 other upstream 225475 42128243 ~ 42134658 (-) True LOC120558559
TU77334 other upstream 281725 42184493 ~ 42188455 (-) False LOC120559080

Expression Profile