RNA id: XM_039799358.1


Basic Information

Item Value
RNA id XM_039799358.1
length 4162
RNA type mRNA
GC content 0.46
exon number 15
gene id calcoco1a
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20949302 ~ 20960825 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttttttgttattgtttcgGGTTAGTTGAGCAACTGAGTCCAAGGAGGAAAGCACGTCTGTTTCGCtcacgtttttgttgttttctcacGCATTGCGACTCCTGTATCTGATAGAGACGGCTCGTTTAGACAAAGAAGTTTACAAAGAAGTGAGGGCGATAAAGGTGCAACATAGCCTGCCTTTTTTGTGTTGCCATGGAAAAAGCGTGGCGGGTGGAGTTCAGAAATGTGGGCTGCAGTTACTTCCCTCAGAGCAGAGTCGATTGCCACTACACACTGAGCTCACAGCACAACTGGGCTAGCAATGACTGGATAGGGCTCTTCAAGGTGGGATGGTTATCAGTGAAGGACTACCACACGTTTGTTTGGGCACTTGCCCCAGCTGACTATCAAGAGGGCACAGATGTCAACTGCTGTGTGCACTTCCAGGCCTCCTACCTACCCAAGCCCAGCTCCCAAGAGTATGAGTTTGTATACATCGATGCTAAGGGGGAAGTGTTCTCCCGCAGCTCCAAATTCACTTTCTGCGCTCCGAAGCCACTTGAGGATCTGGTGACCCTTGAAGAGGAGCTCCATGGAGAGGAAGGAGGCACAGACATGTTGCTGGTAGTGCCCAGGGCTGAACTGCTGCAGAGTCGACTGCAGGAATGTCTGCGAGAGCGTGCCGAGCTGCTGCAGGCACAGGAGGCGGCAAACaggcagagggagaaagagaaggaggagtacAAGAGGGCGAGGGAGGCCTGGGACAGACGACGCAAAGGGCTAGAAAGTGATATCGCCAACCTGCAGGAAGAGATGAAGCAGAGTCGAGAGAAGGTCGAGGAGATGGAGATGGTGCAGAAGGAGGAGCAGGCTTTTGGAGAATCACTAGCCCAGGAGAAACTCGATTTATTGGATTCGAGGGAGGCGAGCAAAGTGCAAATCAAAGAGCTGGAGGAGGATATCAAAACCCTGACTCAGAGAACtgtagaaagagagacagagttgGAAAGgatgaAGGAGAGAGCAAAGAGAGCAGGAGCTCAGAGAAAAGAAGAtgagtgtgagagaaagagcCTGCAGACCAAGCTGGAACAGACAGAAGGTGAACTCCGAAGTCTGTCTAAGGAGTTCCAAGGCCTGAGGAATTCGCTGGCCCAGAGAGACACAAGTGTCCTGCAGCTTCAAAACAGCATCACCACCCTCACCCAGAAACTCACCACTGCCCACAGGAAAGAGGCGGAGAACGAGGCCACACTGAAGGAGATGCGGAGCCTGCGGGAGCGTCTGAACGCCAGCGAGCGTGCTGCAGAGGGCTTGAAGAGTGATCTAAGTGCCATGGTGGTCCAGAGGGATCATGGGCAGAGCGAATTGCATCAGGCTCGTCTGCAGGCTGCCCAGCTCACCCTTCAGCTTGCAGATTCCAGTCTGGcccagagagagggaagagccCGCTGGGCCCAGGAGAGGCAGAATCTGCAGCGCAGTGCTGAGAAGGACCACGAGCGTCTGGAGAAACTCAACGCAGAGATGcagaggatggaggagaggctgcaggaggagaggatggagagagtgaaGCTGGAGGTCGAGCTTGGGAGAGAAAAGGATTGCAACCGGGTTCAGCTGAGTGAAACCCGCAGGGAGCTCCAGGAGCTGAAGGCCAGCTTGAGGGTCGCCCAAAAAGAGAAGGAGCAGCTACTTGCAGAGAAACGGGAGTTGATGGAATACATCTGTCAGCTGGAGCAGAAGATGGGAACAGTGGCCAGTGCCAAGTGGAGCGCTGCCCCGATTGCCTCTACAGGGCGGCCTGGCAGCGTATTGTCTGACTCTGAGGACGAGAACCCGGAGGCTTTGCAACCCCTCCGTCCACCAAGATCTCTGGGACACTACAGCCTGTGTGAGCCGGGCCAGCTGGACTCTTTGCTCCTTGccacccctcctccctccctcagggaggtggagaggagcgCAGTAGTCATCAACCAACCAGCCCCGCTCTCATCGCCACACCAGGCCGACGCTGACACTCTGGCGCACAGCTCTGATTCGGAGGAGGAATCTGATATACTTCAATGTGCAAGACCCAGCTCTGGAGAGGAAACAGCACTTTTGCTGCCTGAGCATGCTGACACTGTTCTCAGTGATCTGGCCGACACCTCGCTATGGTAACCAGTTGACATCCAGCCACAGCGAGCGATCAAAGCGAGGAAGAAGGGCACTTTCTTGGAGTTAACGTGGTTCCACGTTACTTCCACCAACAAGCACAGATACAGCTCACTCACTACACAGACAAAATGTTAATATGCAATTTACATCGTATTTGCCGTGAACCTTGGTTTTCCCCTCTTAGACTGTTGTTATTGCCCTCGCTGTTTTGTGTTTAGGACTGACATAATGCTTGTGGAGGCAGGTGGTTGCACAGTTTGAAACAGCGTGCTTTTGAGCATGGGCTCTAGCGTTTGAGAGTTCACAGGCTGTAGCAGAATGATTTCTGTTGAATCATTGCTATGTCGAGTCTTTACGATGgctgttatgtcattttttatgacatttgtgATTAGGAGTCATGACAGGCACTGTAATTATGATGTTTTGTGAAGGCCCAGCTCCACTGGAAATCATGGCAAAACTCTCTTCCAGCATTAAATTCTCCACAGCAGCTTTGAACGCTATTCACGGCAGCATAAAGTAATGATACAGCCTCATGCTAGAATTGCAGTGATGTAGGTCTATGACATCATTTTTCTCCTCCATTTACTCAGAACTAAGATTTGATATGCACTTTCTTGTACGCATTAGCAGTTGATTGTTGTCATTCAGATGCAGTTAAGGAGATTTAGTGACACAGAGGCGCTCTAAGATGGACAAGCATTTGAAATGGAAAGCTTATTGAACAGATTGTGTTTAAAGTCTATTAATTTAAATAGATGCCAGATGCAACTTTCTACTTCAGTACCTTCAtatcatcattattataaaaTTAATGCTCATAAGCTTTTCACTATAGATGAACTGCAGTTTTTACTTGTAACGATCCTGGATTTAATCAAAATGAAATGCGAATTTACTAGCTGTCTATTTGCATATGTAGTGTTTGTTACAGTTTGTATTTTACAGAAATCTTTTCTCACATTCGTGCAGTTCAAAATTTGTGcctaaaatattcaaaaaagagTCAGAGAAAATCATCTTCATAGATCCTGACATCATGACATGGTGTTGGTATTTTCCTCTAGCCCGATGGAAATATACTGcctaataaaaaaatagttgCCTACCTTTTAATCAATAccatttgcatttttcatgaTTTCTGAGTTATGCTGCAACAAAACTATATTCAGGTTTAGTTAGGTGTTTTCACACAACTGTCCGTGCAATGTGTGACAAGTTTTCCATGCTTGGCTAAGAAGATTAGAAACTTTGATGCTTGATTTTATCTGCTGTATTTGCACCCTATTTTTACTATCAAAGAGTTTTTAGATGAAAAGTTGATGTATGGATACTTAATATGTCAGTTGTGTCCtttcatcattatcattatctttattaatatcattgtgtgttgtgtttacgTATATTTaatcaacactttttttgttttcacctTCTGCTTTCAAATACTCATGTTTGACTCTAATAAGATTTGATATACGAGTTATATTGTTGCAAGATATTGGTGCTAATGAAAGGGAATGATACCGGCATGTTGAGTTTAAGGTGAGAGAAATTGATTTTGAATGTTTAAACAGGAGGAACAGGATTATGAAGGTAGTCATGAAAGGAGTAAATGTCTGTCCATCCTCGTGTTACTGGGTACATGTTGATTCTCCTTAGTATAAAAGTGGGAATGTTTTGAGGAGCCTGGTATTCTTTCCCAGTAGATagcacactacactacactacatgTATTCTCCATAGTCCTTGTTTGTGCTTGTAATCTGACTTTATGTCTTAGGGAAGTTAGTCTTTTGTTGTTCCACTGAGAGCTCCAGTACGAGTGCTCCTCGTCGGGTCACCGTCTCCAGTTGCAATAAAGCTCCAGTGGTTATGGTTTGTTTTGAAGTTTTGTGTGTGGAGGTTATCCCACATGTACACCGCCGTGTATTTTCTCATCAGTCATGTAACAGGGTTTGGGTGGGGTTCTGTATAATAAAATGGTTTATGTATCTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639095.1 lncRNA upstream 169903 20772453 ~ 20779399 (+) True LOC120558354
TU68681 lncRNA upstream 196957 20751595 ~ 20752345 (+) True G51386
XR_005639130.1 lncRNA upstream 286749 20661297 ~ 20662553 (+) True LOC120558477
TU68645 lncRNA upstream 416733 20446243 ~ 20532569 (+) True LOC120559772
TU68592 lncRNA upstream 778183 20157789 ~ 20171119 (+) False G51317
TU68980 lncRNA downstream 259826 21220651 ~ 21222557 (+) True G51625
TU69050 lncRNA downstream 269445 21230270 ~ 21233529 (+) True G51685
TU69089 lncRNA downstream 316951 21277776 ~ 21288705 (+) True LOC120559383
XR_005639244.1 lncRNA downstream 316973 21277798 ~ 21288402 (+) False LOC120559383
XR_005639243.1 lncRNA downstream 316991 21277816 ~ 21288402 (+) False LOC120559383
XM_039800291.1 mRNA upstream 189857 20755053 ~ 20759445 (+) True cbx5
XM_039800289.1 mRNA upstream 198611 20745555 ~ 20750691 (+) False nfe2
XM_039800288.1 mRNA upstream 198611 20747188 ~ 20750691 (+) False nfe2
XM_039800287.1 mRNA upstream 198611 20747189 ~ 20750691 (+) True nfe2
XM_039800314.1 mRNA upstream 228845 20713386 ~ 20720457 (+) False znf740b
XM_039799488.1 mRNA downstream 46726 21007551 ~ 21019292 (+) True nr1d4a
XM_039799489.1 mRNA downstream 59680 21020505 ~ 21023161 (+) True mfsd5
XM_039800108.1 mRNA downstream 64315 21025140 ~ 21031195 (+) True LOC120558837
XM_039800106.1 mRNA downstream 72070 21032895 ~ 21045968 (+) True si:dkey-21c19.3
XM_039801494.1 mRNA downstream 110882 21071707 ~ 21166417 (+) True lrp1ab
TU68644 other upstream 416840 20446243 ~ 20532462 (+) False LOC120559772
unassigned_transcript_229 other upstream 624061 20325169 ~ 20325241 (+) True trnaf-gaa_3
unassigned_transcript_228 other upstream 627720 20321511 ~ 20321582 (+) True trnah-gug_9
TU68517 other upstream 948864 19996511 ~ 20000438 (+) True zgc:194242
TU69094 other downstream 328763 21289588 ~ 21290962 (+) True G51716
TU69116 other downstream 400465 21361290 ~ 21363640 (+) False G51734
TU69117 other downstream 400465 21361290 ~ 21364430 (+) True G51734
TU69195 other downstream 598065 21558890 ~ 21559349 (+) True G51804
TU69309 other downstream 822441 21783266 ~ 21788322 (+) False LOC120559721

Expression Profile