RNA id: XM_039799402.1


Basic Information

Item Value
RNA id XM_039799402.1
length 1967
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC120558415
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23284919 ~ 23292578 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGCAAGCAGAATGCAGTGGTGCACAAAGTGTGCTGTTATTACTACTGAAAGAGCGTCCAAACACAGTCATGGCAGAGAATGAGGAATTGGGAAAGCCTGCGGTGAGGAGAGGGGCTTCACCTGGTGCGCTGATGTCCCCCGACAGAGACTAACTGTGGTCCTGGTGTTGGCAACGCTCATATCTGCATTTGGTTCATCGTTCCAGTATGGTTACAATGTGGCTGTGATCAACTCTCCATCACCGTTCATGCAGCAGTTCTATAATACCACCTACATGGAGCGTTATGGCAGTCCGATGGAGGAGAACCTCCTAACTCTGCTGTGGTCTCTTTCTGTGTCCATGTACCCGCTAGGAGGCTTCTTCGGCTCTCTGATGGTAGCCCCTCTGGTCAACAAATTAGGGAGGAAGGGCACCCTACTCTTCAACAACATCTTCTCCATCGTCCCTGCTGTGATGATGGGAGTCAGCGAGATTGCCAAGACCTATGAGATCATCATTGTGGCTAGGTTCATAGTGGGCATCTGTGCAGGTCTCTCATCCAACGTGGTGCCAATGTATCTGGGAGAACTCTCACCCAAAAACCTGAGGGGAGCCCTTGGCATCATACCACAGCTCTTCATCACTATCGGCATCCTCAGTGCACAGGTGCTGGGCATCAGAAACATACTGGGCAACAGCACAGGTTGGACCCTCATGCTGGGTTTGACTGGTATCCCTGCCATGATAGAGCTCCTGCTGCTGCCCTTCTTCCCAGAGAGCCCCAGGTACATGCTCATCCAGAGAGGAGATGAAAAGACAGCAAAGAAAGCGCTACAGCGCCTGCGTGGCAGTAACGACGTGGATGCAGAGCTGTCAGAGATGCGTCTGGAGGACCAGTCGGAGAGGGCCGATGGCCGACTGTCTGTGCTCAGCCTGCTGTCCCAGCGCTCCCTTCGCTGGCAGCTGGTCTCCATCATCGCCATGAACATGGGCCAGCAGCTGTCGGGGGTCAATGCTatcTACTACTATGCAGATAGCATATATGCCACTGCAGGAGTCAAGCAGAGTGACATCCAGTACGTTACTGTGGGAACAGGTGCAGTGAATGTCTTCATGACCATGGCTGCTGTCTTCATTGTGGAAGCCTGGGGACGACGGCTGCTCCTGCTCTGTGGCTTTGGGATCTGCTGTGGAGCCTGTGTGCTGCTCACTGTCGCTCTCACCTTCCAGGAGAGCGTGACGTGGATGCCCTACATCAGCATCGCCTGTGTCATCATCTACGTCATAGGACACGCCATAGGACCCAGTCCTATTCCTTATGTGGTCACCACCGAGATGTTCAGGCAGTCGGCCAGGCCCGCTGCTTTCATGGTCGCAGGCTCCGTCCACTGGCTCTCCAACTTTACTGTTGGCCTCATCTTCCCCTTCCTAGAGAGAGGTCTGGGCTCCTACAGCTTTATAATTTTTTCCTTCATCTGTCTGGTCACGCTGATCTACATCTGGCTGGTGGTCCCGGAGACCAAGAACAAGACATTCCTGGAGATCTGCCAGATATTCGCCAAGAGGAACAACGTGGAGATCAAACTCGGTGATGGTGATCTGCCACTGAAAGACAGCAAAGAAAGCCTGGAGGATGCAGTCAGGGTCACAGCCTTTTGAAGACAAATGAGAGCATTCAGAGGAGAGGAAGTCTTCACTCTTGGGAGGATTGTAATGGACTGggaatgtcttaatttagcctCTACTTTCTATTTCACAAGGAACCTTTACAGAATCTCTTTGTACATTGTTTGTGGCTACTAAATCTTTGTGCAATTCAATTCCAGCTAAAACTTGATGTGCGCACTGCCACGCCACCTTATAGAGGTGTGAATTGGTGCTTGAgtcattaaagcgcccatattatgctcattttcaggttcataactgtattttaaggttgtaccagaataggtttacatggtttaattttcaaaaaacaccata

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70058 lncRNA upstream 10094 23265231 ~ 23275195 (+) True LOC120558323
TU70061 lncRNA upstream 10094 23265231 ~ 23275195 (+) False LOC120558323
XR_005639092.1 lncRNA upstream 10148 23265329 ~ 23275141 (+) False LOC120558323
XR_005639093.1 lncRNA upstream 10148 23265329 ~ 23275141 (+) False LOC120558323
TU70027 lncRNA upstream 38785 23221926 ~ 23246504 (+) True G52461
TU70102 lncRNA downstream 154775 23447353 ~ 23447557 (+) True G52509
TU70174 lncRNA downstream 393774 23686352 ~ 23687016 (+) False G52569
TU70175 lncRNA downstream 393860 23686438 ~ 23687016 (+) False G52569
TU70181 lncRNA downstream 393860 23686438 ~ 23687361 (+) True G52569
TU70232 lncRNA downstream 496870 23789448 ~ 23790522 (+) True G52604
XM_039801909.1 mRNA upstream 3513 23277386 ~ 23281776 (+) True gpr157
XM_039800720.1 mRNA upstream 71304 23207923 ~ 23213985 (+) True LOC120559183
XM_039800833.1 mRNA upstream 77958 23205387 ~ 23207331 (+) False si:dkey-183p4.10
XM_039800182.1 mRNA downstream 14126 23306704 ~ 23319684 (+) False eno1a
XM_039800181.1 mRNA downstream 16295 23308873 ~ 23319684 (+) False eno1a
XM_039800179.1 mRNA downstream 16295 23308873 ~ 23319684 (+) False eno1a
XM_039800180.1 mRNA downstream 18961 23311539 ~ 23319684 (+) True eno1a
XM_039800436.1 mRNA downstream 61380 23353958 ~ 23445765 (+) True rerea
TU69870 other upstream 438351 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 722768 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 724961 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 1190399 22093905 ~ 22094890 (+) False LOC120558641
TU69454 other upstream 1224644 22056721 ~ 22060645 (+) False avpr2aa
TU70197 other downstream 466656 23759234 ~ 23765153 (+) False tmem201
TU70648 other downstream 1660864 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 2451032 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 2779007 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 3059882 26352460 ~ 26353463 (+) True G53232

Expression Profile