RNA id: XM_039799492.1


Basic Information

Item Value
RNA id XM_039799492.1
length 1395
RNA type mRNA
GC content 0.47
exon number 1
gene id foxl2l
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23744072 ~ 23745466 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCTTTGCCCCTGCAGGACGCACAAGCGGATACCTGAGCCATGGATGCAGAGAAGGAATACCCCGCCGACCAGGGAGTGCAGCTCTTGGACATCAGCTCCAACTCGTACCCTTCTGAGCCCAAAGGTGCGGAGGAGACCGGTCAGCAGAAGCCGCCGTATTCATATGTGGCTCTCATTGCCATGGCCATCAACGACAGCCACGACAAGAGACAAACGCTCAGCGGAATATACGAATACATCATCTCCAAGTTCTCCTACTATGAGAAGAATAAAAAAGGGTGGCAAAATAGTATCAGACACAATTTGTCTCTCAACGAGTGCTTCGTTAAGATTCCCAGGGAAAACGGAGGGGACAGGAAAGGCAACTATTGGATGCTGGACCCCGCATTTGAGGACATGTTTGACAAGGGGAACTACCGGCGGCGGAGGAGGGTGAGAAGACCCTATACCCAGAGCGTGCCTTACCTGACCGGGAGCTCCGTGGACTATCCCGAGCCGCTCTACCTGCAGCCTTATGTGAGCAGCTCCTGGAGTCTGTCCCAGCCGACCGGATACCCAACACCCCATGTCATCACTGGGCACACCCGCAGCGTGTCCCCAAGCGGCCCGGTGAGTTCGTTCTGCTCGCCCCCCCACTTCCATCACTCTCCTTACGGCGCCTACCACCATCCGGCTGTGCTGGTGCCACACAACGGGTATCCATACGGCGGAGTGACCCAGCCAGTGAGTCCTGGCGGAAGCAGCGTCTCGGTGGCATGCAACTACCAGCAGCTCACCACCTGGCAAGCGGAGGCGCCGCTCGCTTATTCAGTGGACCAGTAGGGGGTTTGAGTTATTGTAACCATTGACAGACAGTCCATTGACTGACAGTTCACTTACTCCAGGTTCATCTGTTTCACGCATTTCAGTTGGGCTGTCATTTGTTTGTCAGGTAAAGTTAATTGTTTGGCTTGATAAGATGCAGGCCTAATTTGTTTATTAACTTTTACATAAGCTGTTGGTTAAGTTTATTGATAGGCCAAGAAATTACAGTCAGTAGCCTACTCACTTGGATGTAGGCTAATAATTGCAGGAAGACAGTTGATTTAAGTCTGAAGCTTAGTGTATGCCTCTTTTGTTAGAGAATTATTTTGCAaccaaataataaaataacttgtaattacatttttattattttcctatttttttattattatgaataGGCCTATGGGCTACATTTGTAACTAGGcctatgttatttatttattttctctggtTTTATCCAATTCTCCGAGCTGCTATGCAACAGTTGATGACACCGAAGCACTGATCAGTTTTCTTATTCGATTGTGAATGTTTACGTGATGTAAAATACATCatgtttgttaaaataaaatgttatttttgcaTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70181 lncRNA upstream 56711 23686438 ~ 23687361 (+) True G52569
TU70174 lncRNA upstream 57056 23686352 ~ 23687016 (+) False G52569
TU70175 lncRNA upstream 57056 23686438 ~ 23687016 (+) False G52569
TU70102 lncRNA upstream 296515 23447353 ~ 23447557 (+) True G52509
TU70058 lncRNA upstream 468877 23265231 ~ 23275195 (+) True LOC120558323
TU70232 lncRNA downstream 43982 23789448 ~ 23790522 (+) True G52604
TU70233 lncRNA downstream 46013 23791479 ~ 23800868 (+) False ctnnbip1
TU70231 lncRNA downstream 68666 23814132 ~ 23814406 (+) False ctnnbip1
TU70245 lncRNA downstream 92226 23837692 ~ 23837962 (+) True G52611
TU70294 lncRNA downstream 264330 24009796 ~ 24011101 (+) True G52628
XM_039801910.1 mRNA upstream 115152 23613688 ~ 23628920 (+) True plekhn1
XM_039801911.1 mRNA upstream 115152 23613688 ~ 23628920 (+) False plekhn1
XM_039801912.1 mRNA upstream 115152 23613688 ~ 23628920 (+) False plekhn1
XM_039801931.1 mRNA upstream 142424 23588381 ~ 23601648 (+) False klhl17
XM_039800770.1 mRNA downstream 899 23746365 ~ 23765165 (+) True tmem201
XM_039800771.1 mRNA downstream 899 23746365 ~ 23757168 (+) False tmem201
XM_039801840.1 mRNA downstream 25165 23770631 ~ 23789093 (+) True pik3cd
XM_039801841.1 mRNA downstream 25165 23770631 ~ 23789093 (+) False pik3cd
XM_039801523.1 mRNA downstream 45981 23791447 ~ 23814406 (+) True ctnnbip1
TU69870 other upstream 897134 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 1181551 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 1183744 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 1649182 22093905 ~ 22094890 (+) False LOC120558641
TU69454 other upstream 1683427 22056721 ~ 22060645 (+) False avpr2aa
TU70197 other downstream 13768 23759234 ~ 23765153 (+) False tmem201
TU70648 other downstream 1207976 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 1998144 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 2326119 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 2606994 26352460 ~ 26353463 (+) True G53232

Expression Profile