RNA id: XR_005639138.1


Basic Information

Item Value
RNA id XR_005639138.1
length 1269
RNA type transcript
GC content 0.44
exon number 6
gene id LOC120558546
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 41904140 ~ 41918743 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACCTTTGCATTCTTGAGAATGAGAAACACCGCCTCATATAAAAGAGGAAATGATTGGTTTCATATTTCATGTTAGTATATCTAGAGGAACCAGGCAGCAGCTCTCAGCAGATTCTAACTTTACAGCAAAGATGAAGATGTATTCATCTGTCACGTTCGCCCAAGTCGGCACCTTTGTCTCAATCATTGTTGTTTTTATCTACAAGGTTGTGATTGACAGGAATTACGAGTGTGATTGTGATGGTAGCGGTTATGACTGTATTTTGTACATGGGTGTACCATCTATAGTTTTATTTGTGTTACAACTCTGGACGATCAAGAAATGGAGACGTACAGGAAAGGCATGCAGTCATAATGATTGTGATGATGATTTTAAATACATATGTAACCAGCTTCTCAAGGCAGTTGTAGTTGGTCTGCTGTGGGTTATCTCTCTGTTAATTGATGGAGACTGGGCTGTTTGCTATCACCACAAAGACTTAGCCTGCAAAGACAAAGCCAAATTCAACTCTACTGAACACGAGACCCTCGCCAATGTGAAATCAAAATCAGAGTACGTTGGCTGGAGTCTCATCTTGGTTATCCTTGGTGTGGTTTCGGTAATGAGATGGTTCTCATGCTGTAGGGATCCAAACTACAGCAAACTGTATGAGAAACTGAAGTTGAAACAGGAGGAATGTGTGCTGAAACAGATAGCAACGGAAGATTTGAAAGAAGAACTCACACTAAATTGGGTAGAAGAAAGATCAGACGTACTAGTCGAAGCAGCAGCCAGCGCAGCAGACAGAGCAGCCAGAAGAGCCACAGATGCCAGAACAGTCAGAACAGCCGGAGTAGACGCAGCAGCCGAAGGAAGAAACCTAGACGAAGTCAACGCAGCCAGAGCAGACGCAGCAGACACAGCCGCAGCCGGAGCAGCAGTCAGAGTAGCAGCCAGAGGAGACATAGACCGACAGATCGCTTTTTTATCAGGaaacaagGTGACTAAGTTTTTGGAAAGGCTGAATCAAGGTCCATCAGCTGATCCTCAGGTGAGTCTCAGGCTATCAGGAGATGAGgagggaggggggaccTGAGTCTTCCAACCCCAGGACACCAGGGGGGGGAGGACCTTCCACCACCATGACATCAGagCCATAACACagcaaacatgaaataaaaaataaaaacagggaaAGGATCATGTGACAAcatcattttcatttcttttcatctatctatctctatatctctctatctctctctctatctctctctacctctctatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76924 lncRNA downstream 131597 41621522 ~ 41773433 (-) False G57271
TU77317 lncRNA upstream 174704 42093445 ~ 42093735 (-) True G57533
TU77318 lncRNA upstream 174704 42093445 ~ 42093777 (-) False G57533
TU77336 lncRNA upstream 251951 42170692 ~ 42175743 (-) True G57544
TU77338 lncRNA upstream 261442 42180183 ~ 42180507 (-) True G57546
TU77335 lncRNA upstream 262985 42181726 ~ 42182319 (-) True G57543
XM_039799333.1 mRNA downstream 2262 41897815 ~ 41902768 (-) True LOC120558363
XM_039800501.1 mRNA downstream 173229 41718017 ~ 41731801 (-) False LOC120559079
XM_039799687.1 mRNA downstream 343395 41548861 ~ 41561635 (-) True LOC120558622
XM_039799679.1 mRNA downstream 382741 41516985 ~ 41522289 (-) True LOC120558618
XM_039800499.1 mRNA downstream 408525 41488131 ~ 41496505 (-) True LOC120559078
XM_039799611.1 mRNA upstream 199003 42117744 ~ 42121471 (-) True LOC120558562
XM_039799608.1 mRNA upstream 209502 42128243 ~ 42134657 (-) False LOC120558559
XM_039800502.1 mRNA upstream 255249 42173990 ~ 42185728 (-) True LOC120559080
XM_039800503.1 mRNA upstream 346785 42265526 ~ 42267943 (-) True LOC120559081
XM_039799604.1 mRNA upstream 365895 42284636 ~ 42309616 (-) False LOC120558557
TU76906 other downstream 173254 41728043 ~ 41731776 (-) False LOC120559079
TU76761 other downstream 773560 41130882 ~ 41131470 (-) True G57146
TU76730 other downstream 826280 41020480 ~ 41078750 (-) False G57134
TU76729 other downstream 826280 41070363 ~ 41078750 (-) True G57134
unassigned_transcript_240 other downstream 953435 40951523 ~ 40951595 (-) True trnak-uuu_11
XR_005639141.1 other upstream 209502 42128243 ~ 42134658 (-) True LOC120558559
TU77334 other upstream 265752 42184493 ~ 42188455 (-) False LOC120559080
TU77403 other upstream 617481 42536222 ~ 42616040 (-) True G57595
TU77410 other upstream 709015 42627756 ~ 42630685 (-) True G57599
TU77438 other upstream 766152 42684893 ~ 42697995 (-) False LOC120558550

Expression Profile