RNA id: XM_039799649.1


Basic Information

Item Value
RNA id XM_039799649.1
length 1520
RNA type mRNA
GC content 0.44
exon number 7
gene id bcas2
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29846882 ~ 29850954 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgaaagtcgCGACCGGTAAAACGTGTTTCTTGTTAGCTGGAGAGGTTATTGTTTTTTAGCTAAGAGGGGCACAAATCAAACAAACTCAACGATATAGACTGATTAAAAATGGCCGGAACGGCTTCAGTAGCTGGTGAAGTGTTCGTCGATGCTTTGCCATATTTTGACCAAGGTTACGATGCAGCAGGTGTCAGAGAAGCGGCCGCAGCGTTGGTGGAGGAGGAGACCAGAAGATACCGACCTACCAAAAACTACCTGAGCTACTTGCCCACACCTGACTTCTCTACTTTTGAGACAGAAATTATGAGGAATGAATTTGAGCGTCTGGCGGCTCGACAGCCCATGGATCTCCTGAGCATGAAGAGATATGAGCTGCCTGCACCCTCATCAGGACAGAAGAATGACATCACAGCGTGGCAGGAGTGTGTGAACAACTCGATGGCCCAGCTAGAGCACCAGGCAGTCCGCATTGACAACCTGGAGCTCATGTTGCAGTATGGAACCAACGCATGGAAGGTCTACAACAATAACTTGGCCTTCATGATTGAGACCGCTCAAAAGGAACTTCAGAAATTCAGGAAGCAAATTCAAGATTTGAACTGGCAGCGTAAGAATGATCAGTTAGCGGGAGGAGCCAAACTGCGAGAACTGGAGTCAAACTGGGTGTCTCTGGTCAGTAAGAACTTTGAGATCGAGAGGGCCATTGTCCAGCTGGAGAATGAAGTAACTCAGCTGAGACAACAGCAGGGGGACGAGAACAAGGAGAACATCAGACAGGACTTCTAGAGCAGCAGCTTTCACCCTCGTAGCACTGATCTACCAACGGATTCCTCACTCAGAAAGATGGCAGCTTGTTTCATCTGCTGACTGCACTCAGAAGAAACCTAAGAAGGTAAAGTTACCTGTACGGAGGAGATTTATTGGGAAACTGCTCATGTTCAACTTTGTCATAAAATAACCTGGACGTTCAGAAGGAGTGGTCCACAAACCTCAGTGACAGCGCTCATTATTCTACTGTAaaaacagtggtggaatgtggTATAATGCAGCATTTGGactctacccccccccccccccaagggtCACCGATGTTTAAAGCGAGactatgtatggtttgcaacaagatgtttctgtttttacAACTGGAGAATTGAATTCATAAGCAATAAATCATCAATCTTTGCTCGACCAGTAGCTAATGCTGGCGAATGTTGGCAAACTTTAATGTGTACCTGACATTACTGAGTCGGTTTGCTAGCTTTAAAATTACTCTTATACTTGTTATACTTGCATTTAACATTATTCCATGAATGCCACAAATTTAGCAAATGTTACATAATCTCGCTTTAAAGTGTAATTTATACCAGCATGTAGGTTTCAGTCTTTGAGGCCATCTACCAACACTCGAATCAAGTGTACATAGTTTGTCAAGTCTGTCAAAGACAAAATTATCTCTGTAAGCCTCGCCTTTCATTCgtcatttttttatgctgtTTTAATAAAATGGACATTTGTTATAT

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process

KEGG:

id description
K12861 BCAS2; pre-mRNA-splicing factor SPF27

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72424 lncRNA downstream 24065 29822520 ~ 29822817 (-) True G54189
TU72420 lncRNA downstream 31432 29814350 ~ 29815450 (-) True G54185
XR_005639328.1 lncRNA downstream 168078 29676371 ~ 29678804 (-) True LOC120559594
TU72338 lncRNA downstream 168078 29676468 ~ 29678804 (-) False LOC120559594
TU72201 lncRNA downstream 323420 29521790 ~ 29523462 (-) True G54038
TU72525 lncRNA upstream 49606 29900560 ~ 29902720 (-) True G54272
TU72537 lncRNA upstream 157083 30008037 ~ 30015317 (-) False tafa5l
XR_005639359.1 lncRNA upstream 645086 30496040 ~ 30500331 (-) True LOC120559738
XR_005639342.1 lncRNA upstream 768312 30619266 ~ 30619890 (-) True LOC120559660
TU72708 lncRNA upstream 782978 30633932 ~ 30635350 (-) True G54407
XM_039801883.1 mRNA downstream 9355 29822872 ~ 29837527 (-) True tmem240a
XM_039801882.1 mRNA downstream 36309 29806794 ~ 29810573 (-) True LOC120559846
XM_039801880.1 mRNA downstream 41900 29783406 ~ 29804982 (-) True atp13a2
XM_039800309.1 mRNA downstream 82214 29752661 ~ 29764668 (-) True cdk11b
XM_039801708.1 mRNA downstream 107689 29734941 ~ 29739193 (-) True ubiad1
XM_039800361.1 mRNA upstream 77234 29928188 ~ 29946233 (-) False brpf3b
XM_039800360.1 mRNA upstream 77234 29928188 ~ 29946233 (-) True brpf3b
XM_039801700.1 mRNA upstream 96952 29947906 ~ 29959771 (-) True mapk13
XM_039801583.1 mRNA upstream 157288 30008242 ~ 30065940 (-) False tafa5l
XM_039801582.1 mRNA upstream 157288 30008242 ~ 30065939 (-) False tafa5l
TU72353 other downstream 81009 29761074 ~ 29765873 (-) False cdk11b
TU72358 other downstream 81689 29761074 ~ 29765193 (-) False cdk11b
XR_005639094.1 other downstream 353909 29476009 ~ 29492973 (-) False clcnk
XR_005639350.1 other downstream 2186236 27644783 ~ 27660646 (-) False xpc
XR_005639389.1 other downstream 2648055 27198712 ~ 27198827 (-) True LOC120559934
TU72536 other upstream 120242 29971196 ~ 30065918 (-) False tafa5l
TU72538 other upstream 120242 29971196 ~ 30072699 (-) False tafa5l
XR_005639345.1 other upstream 157288 30008242 ~ 30065941 (-) False tafa5l
XR_005639344.1 other upstream 157288 30008242 ~ 30065941 (-) True tafa5l
XR_005639347.1 other upstream 157288 30008242 ~ 30065940 (-) False tafa5l

Expression Profile