RNA id: XM_039799669.1


Basic Information

Item Value
RNA id XM_039799669.1
length 683
RNA type mRNA
GC content 0.48
exon number 2
gene id taf13
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 33763783 ~ 33764604 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAACGTTTGTTCTCCCGAGGCGGAAGTCAACAGAGCCCCCATCCTGTTGTGTTCCTGCGCTAAGCTACAAGAATGGCGGATGAGGAGGACGAGACTGGCTTCGATGAGGAGTTGGATGACGGATCCGGCGGAGTAGATGTCGGCCACGGGAAGAGAAAGAGGCTCTTCTCCAAGGAGCTCCGGTGTATGATGTACGGATTTGGAGACGACCAGAACCCGTATACTGAGTCTGTGGATATTCTGGAGGACCTGGTCATCGAGTTTATCACGGAAATGACCCACAAAGCCATGTCCATCGGACGCCAGGGCCGCGTCCAGGTGGAGGACATCGTTTTCCTAATTCGCAAGGACCCCCGGAAATTCGCCAGAGTCAAAGACCTACTGACCATGAACGAAGAGCTGAAGAGAGCCCGCAAAGCTTTCGACGAAGCAAATTATGGCTCATAAAAACCGCCTACACCTAATTTGAcagtttatttcttttaattgctGTTCAACTGAATTGTTCATTCGCAGATCTGTGTTCTTGAGGATTTTGTTTAGCCTTGACTAGCTGTCcaaagtcagtttttttttggtgatttCATACGGTGGTATATGACCGTGACGAGAATGTCAAAGTGTTACCTGGTGTCATGCTGTCTGGGACTGTCTCAATAAAGGAACTTACATAGTGTTTTCA

Function

GO:

id name namespace
GO:0006366 transcription by RNA polymerase II biological_process
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K03127 TAF13; transcription initiation factor TFIID subunit 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73500 lncRNA downstream 6661 33750289 ~ 33757122 (-) True G55034
TU73443 lncRNA downstream 206124 33555800 ~ 33557659 (-) False lamb2
TU73444 lncRNA downstream 206213 33555800 ~ 33557570 (-) False lamb2
TU73395 lncRNA downstream 255360 33507434 ~ 33508423 (-) True G54949
TU73393 lncRNA downstream 256560 33506362 ~ 33507223 (-) False G54947
TU73523 lncRNA upstream 66445 33831049 ~ 33831559 (-) True G55050
XR_005639136.1 lncRNA upstream 92847 33857451 ~ 33875420 (-) True LOC120558540
TU73569 lncRNA upstream 101350 33865954 ~ 33951682 (-) True G55093
TU73568 lncRNA upstream 151491 33916095 ~ 33950009 (-) True G55092
TU73600 lncRNA upstream 187661 33952265 ~ 33952658 (-) True G55119
XM_039800458.1 mRNA downstream 32311 33730330 ~ 33731472 (-) True LOC120559034
XM_039799262.1 mRNA downstream 53016 33696847 ~ 33710767 (-) True si:rp71-17i16.5
XM_039801162.1 mRNA downstream 79509 33618623 ~ 33684274 (-) True lamb2l
XM_039801161.1 mRNA downstream 94144 33619197 ~ 33669639 (-) False lamb2l
XM_039801163.1 mRNA downstream 115918 33618623 ~ 33647865 (-) False lamb2l
XM_039801839.1 mRNA upstream 190722 33955326 ~ 33963940 (-) True LOC120559811
XM_039801837.1 mRNA upstream 190722 33955326 ~ 33961162 (-) False LOC120559811
XM_039801836.1 mRNA upstream 190722 33955326 ~ 33961158 (-) False LOC120559811
XM_039801838.1 mRNA upstream 190722 33955326 ~ 33960964 (-) False LOC120559811
XM_039801847.1 mRNA upstream 369655 34134259 ~ 34165964 (-) False snphb
TU73247 other downstream 876493 32880193 ~ 32887290 (-) True G54834
TU73146 other downstream 990297 32767357 ~ 32773486 (-) True G54756
TU73036 other downstream 1441831 32316960 ~ 32321952 (-) False LOC120558955
TU73035 other downstream 1451005 32306922 ~ 32312778 (-) False LOC120558955
unassigned_transcript_235 other downstream 2536652 31227060 ~ 31227131 (-) True trnaq-uug_1
TU73607 other upstream 259414 34024018 ~ 34127495 (-) False G55124
TU73620 other upstream 323366 34087970 ~ 34093118 (-) True G55131
TU73610 other upstream 353300 34117904 ~ 34127495 (-) False G55124
TU73658 other upstream 525802 34290406 ~ 34290887 (-) False ntsr1
XR_005639223.1 other upstream 1505294 35269898 ~ 35277854 (-) True LOC120559165

Expression Profile