RNA id: XM_039799676.1


Basic Information

Item Value
RNA id XM_039799676.1
length 2099
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC120558615
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 41296080 ~ 41707346 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATGTCTCGGTGTCCCAGAGGTCTTCCAGGTCCAGCTGCAGCGTGAGAAACCCTCCAATCAGAGCAGTCCAGTGGAGCTGTGACTCATCAGGAAACAACTCACCTCAGTTCTTCTCTGTCAACATTTAGGACTGTTTGaagaaactaACACTTAAGGTCCTCATCCTCAAGCTCCAGTGAAGCCATGGCAGAGAACACCAACACCACATTCAAATATGACAACATCCCCTGCATATTTGAGATCCCAGGACCTCCCACTCGCAAACAGCTGAAaccaaagaaagagaaaattgGAACTCTGACAACAATGACTCTTGGAGAAAAAAATCCCAACAAGATAAACAAAACCATTTTACTGGTGGGTGAAACAGGAGCAGGAAAATCTACTCTGATCAACGCTCTGGTCAACTACGCCATGGGAGTGGAGTGGGAGGACGATGTCTGGTTTCAGATcgtagaggaggagaagaaaagtaAATCACAAAGTCAGACATCAGATGTGATCGTGTACCAGATCTTTGGTTTTGAAGATAAGCCTCTGCCCTACTCTCTGACCATCATTGATACTCCTGGATATGGAAGCACTGCTGGGATTAAAGAAGATGTCATCATCAGTCAAAGGTTGTTTGATTTGTTTCGCTCAGATGATGGAGTTCATGAGATTAATGCGGTGGGTCTGGTGCTGAAAGCAACTGACAATCGACTGAGTGACCGAATGAGGTACATCTTCGATTCAGTGATGTCTCTGTTTGGAAATGacatggaaacaaaaattgttgccctcatcacacactcaaATGGTCTGACACCTGATGTTCTACAAGAACTTGTGGATGCAAAGATTAAATGTGCCAAAGATAAAGAGAATGAGACTGTTCATTTTATGTTCGACAACTGCCAGagcaaacagaaaacaaagaaacagcTGTTTGCTCTAAAAAATGCATGGGGCTTAACAATGAATGGAATGGCTCAATTCACTGATTACCTGAATGCAGCTTCACCTCAAAAGCTGTTGACAACTGTTGAAGTGATGAAGGCTCGCATCAGACTCGCAGCCTGCGTCCAAAACCTGCAAGAGAGAATTGCGTTGACtgaacacaaacagagagagatccaACAGACGAAGGAGCTTCTGAAGCTACATGAACAACAGATGAAGGACAATGAGAAGTTCACTGTAGAAGTTGATGAGGTCTACAAAGATAAAGAACCTATCCTTGGTGGGACGTGGTGGTTGGTGTTTTTTGAAGGAGCCGTCTGCTGTAAAGTCTGTGAGGAGAACTGCCACTATCCTGGATGCACAATGGCCCAGAAACCAGGACACTGTGAAGTTATGAAAGATGGCCGCTGCACGTCATGTACCAGGAAGTGTCCTGCGTCAGATCACGTGAAAGAAAACTGGAAGTATGTGTCCAAGACAAGGAAAGTTCCGAAGACTCTGAAAGATGTGAAGGAGAAGTACGAAAAGGGTCGAGCAGACTGTGAGAAGACAACAAGCCTTTTGGAAACTCTTGAGAAGCACATGGATGAActtcagaaagaaaaagatCAGTTGATTGAAGAGTCTTTCCAGCATGTTGTTCAATTGAAGCAGATCGCTCTGAATGTTAATTCACTCTCCACTCATGTCCACTTGGATGTCCTGATTAAGAAGATGGAGGAGAAAGGAGacacagagaagaaaaagaaactggAAGAGATGCAAAGTCAAATTGGTATAGATGATGAAATCAAAGTAGCGCTGTTCTACATGTTTGGTAAACTTACAGGAGCTGTTAAAGCACTGAGGAAGTATATGTGAACAGAATCActgagagcagacagctgtgtaGGAAACACAGTCTACACTGATGATCACGTGTTTCATTATGCTTCTACTAAATGTGATATTaatgaaaaaatacataaaaaatgtaaacgtaATCATCTTCTGTGTTATGATGTAATTATAGTTACTTCACTTTACTAATTAGAAAGGTTTGGCACAACAGCTGTGGTTTTAGATGCAGTGAGGACGCCCCCTGCTGGTTAATGTTGAGTACAGCAGCTCCCTCCTCTATAGCACTAACTTCAGAAATCAGgttgtatttatttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76787 lncRNA downstream 115594 41179423 ~ 41180486 (-) True G57155
TU76778 lncRNA downstream 136475 41158193 ~ 41159605 (-) False G57149
TU76770 lncRNA downstream 137141 41155931 ~ 41158939 (-) False G57149
TU76766 lncRNA downstream 137141 41158193 ~ 41158939 (-) True G57149
TU76581 lncRNA downstream 159462 41126335 ~ 41136618 (-) True LOC120559188
TU76907 lncRNA upstream 9524 41716870 ~ 41718898 (-) True LOC120559079
XR_005639372.1 lncRNA upstream 50196 41757542 ~ 41758659 (-) True LOC120559836
TU77317 lncRNA upstream 386099 42093445 ~ 42093735 (-) True G57533
TU77318 lncRNA upstream 386099 42093445 ~ 42093777 (-) False G57533
TU77336 lncRNA upstream 463346 42170692 ~ 42175743 (-) True G57544
XM_039800495.1 mRNA downstream 96946 41165855 ~ 41199134 (-) True LOC120559074
XM_039800728.1 mRNA downstream 158354 41128301 ~ 41137726 (-) False LOC120559188
XM_039800493.1 mRNA downstream 270606 40845208 ~ 41025474 (-) True itpr3
XM_039801396.1 mRNA downstream 459871 40777034 ~ 40836209 (-) True LOC120559573
XM_039801035.1 mRNA downstream 626737 40660809 ~ 40669343 (-) True LOC120559369
XM_039800501.1 mRNA upstream 10671 41718017 ~ 41731801 (-) False LOC120559079
XM_039799333.1 mRNA upstream 190469 41897815 ~ 41902768 (-) True LOC120558363
XM_039799590.1 mRNA upstream 197684 41905030 ~ 41918739 (-) False LOC120558546
XM_039799589.1 mRNA upstream 206530 41913876 ~ 41918743 (-) False LOC120558546
XM_039799611.1 mRNA upstream 410398 42117744 ~ 42121471 (-) True LOC120558562
TU76761 other downstream 164610 41130882 ~ 41131470 (-) True G57146
TU76730 other downstream 217330 41020480 ~ 41078750 (-) False G57134
TU76729 other downstream 217330 41070363 ~ 41078750 (-) True G57134
unassigned_transcript_240 other downstream 344485 40951523 ~ 40951595 (-) True trnak-uuu_11
unassigned_transcript_239 other downstream 347479 40948529 ~ 40948601 (-) True trnak-uuu_10
TU76906 other upstream 20697 41728043 ~ 41731776 (-) False LOC120559079
XR_005639137.1 other upstream 196794 41904140 ~ 41918741 (-) True LOC120558546
XR_005639139.1 other upstream 196794 41904140 ~ 41918739 (-) False LOC120558546
XR_005639138.1 other upstream 197684 41905030 ~ 41918741 (-) False LOC120558546
XR_005639141.1 other upstream 420897 42128243 ~ 42134658 (-) True LOC120558559

Expression Profile