RNA id: XM_039799789.1


Basic Information

Item Value
RNA id XM_039799789.1
length 2436
RNA type mRNA
GC content 0.49
exon number 10
gene id alas2
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24990894 ~ 24999555 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacacacaccctaagcTGAGACCCATACCACCCCTCTGAAGGGTGGGAGCAGAGCTGATTGCTTTTCAACATCTGACTAATAACTGTTGACACTTTCTGACGTTCTGTCTATTTGCTGTTCTGAAGTTCGTCCTCAGTGCAGGTCAACAGAGTAAGAACAGCTGCACTGCAATGGCTGCCTTCCTTCATCACTGCCCCTTCCTAAAGTCTGTGCCTAAGCCAGCTTTGAGGAGAACTGGAGCCACCTTGCTGTCTCTGGCCGATCAATGCCCCATCATCACTCGCCAGATCAGTGTGAGCGGCACAGCTTCTCTGGAGGCCAAGGTGGGCGTCTCACCCATCAAACCCAGGAGTCACCAACTTTCCACAGTTGATCAAAGGAGGCTGTTTGCTCTGAGAGCTACTGAGGTTGCTGTGTCTGTATCGAAGGGCTGCCCCTTTGTCACCTCTGAGATTGGGATTGTCCGAGCCAGCCCTGAAGTACAGGAGGACGTCCAAGATGGTTTGATGACTTCTCTGTTGAAGGGTTTAAAGGATGCAATCCTCCCAACACCAGCTCAACCCAACACTGTCACCCACCTCCTCAAAGACAACATGGTTGGCCCCAGCTATGACTATGACCGCTTCTTTATTGAGAAGATCGCTGAGAAAAAGAAGGACCACACATACAGAGTCTTCAAGACCGTGAATAGGAGCGCTGAGGTCTTCCCGTTTGCTGAGGATTACTCCATCTCTGGGCGGGAGGGCTCCCAGGTTTCCGTCTGGTGCAGCAATGACTATCTGGGAATGAGTCGACACCCACAGGTGCTCAGTGCAATCAGAGATGCTGTGGAAAAGCACGGCGCAGGAGCAGGCGGGACCAGGAACATCTCAGGCACCAGTAACTTCCATGTGTCACTGGAAAAGGAGCTGGCACAGCTGCACCAGAAAGACGCAGCTCTGGCCTTCTCCTCCTGCTTCGTGGCAAATGACTCCACCCTCTTCACTTTGGCTAAGATGCTGCCAGGGTGCGAGATCTACTCTGATGCAGGGAACCACGCATCGATGATTCAGGGCATCAGGAACAGCGGAGCCAAGCGCTTCATCTTCCGCCACAATGACAGTCGACACCTGGAGGAACTGCTGCAACGCTCTGACCCCAAGACACCCAAAATAGTAGCTTTCGAGACTGTGCACTCAATGGATGGTGCCATATGTCCTCTGGAAGAGTTATGCGATGTCGCTCATCGTTATGGAGCTCTGACGTTTGTCGATGAAGTTCACGCTGTGGGCCTGTACGGAGCCCATGGAGCTGGAGTGGGAGAGAGGGACAACATTATGCACAAGATTGACATTGTTTCTGGAACTTTAGGCAAAGCCTTTGGATGTTTTGGAGGCTACATCGCCAGCAGCGCCGCCCTGGTGGACACAGTGCGCTCCTTCGCAGCCGGCTTCATCTTCACCACTGCCCTGCCCCCGATGGTCCTGGCTGGAGCCCTGGAGTCTGTCCGGGTCCTGAAGAGCCCCGAGGGGCAGGTGCTCCGCAGAGCCCACCAGAGGAACGTCAAACACATGAGGCAGCTGCTCATGGATAAGGGCCTACCTGTGGTCAACTGTCCTAGCCACATCATCCCCATACGGGTGGGCAACGCTGAGCTCAACACCAAGGTGTGTGACACCCTGCTGGAGAGACACAACATCTACGTCCAGGCCATCAACTACCCCACGGTGCCTCGTGGTGAGGAGTTGCTGCGCCTGGCTCCTTCTCCTCATCACAACCCCGCCATGATGGACTACTTTGTGGAGAAACTGGTGGAGGTGTGGCAGGAGGCAGGGCTCCAGGTCAGCAGCCCGGCCACAGCTTCCTGCACCTTCTGTGACCGTCCGCTGCATTTTGACCTTATGAGTGAGTGGGAGAGATCTTACTTCGGCAACATGGAACCACAATACATTACTGTGTTGGCATAATACCAAAGTACATGTAGCTTCTCAACAGAagttacacatacagtaaatgcatAAATGTTATTCTAAATTCAACATCTTTTTAAATGATAAAGTCCTTCTTCAAATGCACTGAGAAGAGTACTGATTTTAGCTTTAACGTGAGTGGTATGAACTAAATTCcaatatttatttctgttttcctGTATTTATGCTTATTAAATTGTTTGCTGTCATGGATATGATTAAAGAAATTGTGCCTTCTCCATTTCAAAAGCATAAAACCTGCACGTGGGCACTTTCTTAAATCTATTATCTAGGTGTGATGGTttgaattaaaatatatttaatttcatTATGCATGATTTCCTTCATACAATATAATGATCATGACCATcatgttttgtttatgttaCAATAATTCAATTACTGATTATTCAGTCATAAAATGTATGAAGTGCTGAGGTTAAATCATTCATAAAATACGGGATAATAAAACATTCTATACA

Function

GO:

id name namespace
GO:0006782 protoporphyrinogen IX biosynthetic process biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0020027 hemoglobin metabolic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0003870 5-aminolevulinate synthase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K00643 E2.3.1.37, ALAS; 5-aminolevulinate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70673 lncRNA upstream 30791 24959816 ~ 24960103 (+) True G52892
TU70634 lncRNA upstream 45743 24940795 ~ 24945151 (+) False LOC120559118
TU70635 lncRNA upstream 45743 24942240 ~ 24945151 (+) True LOC120559118
TU70586 lncRNA upstream 237714 24751895 ~ 24753180 (+) True G52827
TU70570 lncRNA upstream 284988 24705538 ~ 24705906 (+) True G52817
XR_005639163.1 lncRNA downstream 10434 25009989 ~ 25015398 (+) True LOC120558677
TU70912 lncRNA downstream 810158 25809713 ~ 25811047 (+) True G53056
XR_005639231.1 lncRNA downstream 995678 25995233 ~ 25997094 (+) True LOC120559215
TU70971 lncRNA downstream 1072030 26071585 ~ 26076664 (+) False G53096
TU70974 lncRNA downstream 1072030 26071585 ~ 26076664 (+) True G53096
XM_039800575.1 mRNA upstream 45574 24940795 ~ 24945320 (+) False LOC120559118
XM_039800571.1 mRNA upstream 71128 24838584 ~ 24919766 (+) True LOC120559115
XM_039800572.1 mRNA upstream 71128 24838584 ~ 24919766 (+) False LOC120559115
XM_039800573.1 mRNA upstream 71128 24838584 ~ 24919766 (+) False LOC120559115
XM_039800574.1 mRNA upstream 71128 24890538 ~ 24919766 (+) False LOC120559115
XM_039799801.1 mRNA downstream 23070 25022625 ~ 25034515 (+) False znf362b
XM_039799799.1 mRNA downstream 23071 25022626 ~ 25034515 (+) False znf362b
XM_039799803.1 mRNA downstream 23071 25022626 ~ 25034515 (+) False znf362b
XM_039799802.1 mRNA downstream 23236 25022791 ~ 25034515 (+) False znf362b
XM_039799800.1 mRNA downstream 23237 25022792 ~ 25034515 (+) True znf362b
TU70648 other upstream 33564 24953442 ~ 24957330 (+) True G52871
TU70197 other upstream 1225741 23759234 ~ 23765153 (+) False tmem201
TU69870 other upstream 2143956 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 2428373 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 2430566 22556329 ~ 22560328 (+) True G52210
TU70864 other downstream 744055 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 1072030 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 1352905 26352460 ~ 26353463 (+) True G53232
XR_005639211.1 other downstream 1380121 26379676 ~ 26382295 (+) True LOC120559113
XR_005639212.1 other downstream 1380121 26379676 ~ 26382295 (+) False LOC120559113

Expression Profile