RNA id: XM_039799930.1


Basic Information

Item Value
RNA id XM_039799930.1
length 2673
RNA type mRNA
GC content 0.49
exon number 19
gene id plod1a
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 36903077 ~ 36952279 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagagagagagagaggggcacaaacagagagagggggCAGGCGTTGAAAGACGAGAAAAGTTCGCTGTCTCTTAAGGAATTGTACAGTTCCGTTAATACCGAAACTCGTGAAAGGATTTTAACTTTAACTGGCAAAAATGAGACTTTCGCCCTTTCTGTTGTTCCCAGGGATTTTTGTCTGTGCACTTTTCCCTTTGACAAACTGTGAAGAGCAGCAAATCCCTGAAGAGAAACTTCTAGTTGTGACAGTTGCAACCACAGAGACTGATGGCTTCAAGCGTTTCTTGGGGTCGGCTAAACACTTTAACTACACTGTCAAGGTTCTTGGTCGGGGCCAGAAATGGATGAGTGGCGACTACATGTCCGGTCCAGGAGGAGGCCAGAAAGTACGACTCCTTAAAGAGGCTCTGAAGGAGTTGAAGAATGAGGACAAAGTCATCCTTTTTATCGACAGCTACGATGTGGTTTTCGCCTCGGGTCCCAAAGAGCTGCTCAAGAAGTTCCAGCAGGCCAGACACAAAGTGGTGTTCTCCTCTGAGAGCCTGATCTGGCCCAACAGACACCTGGAGGACAAATACCCCCACGTCCTCGTTGGCAACAGGTTTCTAGGCTCAGGAGGTTTCATTGGCTACCTTCCCAACATCAAAGAAATGGTTGCTGACTGGACAGGAGAAGATAATGACAGCGACCAGCTGTTCTTCACCAAGATTTACATTGATCCAGTTAAAAGGaaatCCATAAATATCACACTGGACAGCAAATGCAGATTGTTCCAGAACCTTCATGGAGCCCTCGacGAGGTGGTGCTGAAGTTTGAGGATGGGCGGGTACGAGCCAGAAATGTGCTGTATGATACCCTGCCAGTCGTCATCCATGGGAACGGACCAACCAAGCTCCAGATCAACTACCTGGGTAACTACATCCCCAACACATGGACATTTGAGACAGGATGCACAGTGTGTCACGAGGACCTCAGCCCACTGACAGCTCTTAAGGAGAGTGAATACCCTCTGGTGGTCATTGGCGTCTTCATTCAGCAGCCCACCCCCTTTGTGACGATGTTCTTTGAACGCCTACTAAAGCTCCAGTACCCCAAAAACAGACTCAAACTCTTCATCTACAACCAGGAAGCTCATCATGAGCGTCACATCAGCTCTTTCCTGAAGGATCATGGGAGCCTTTATCAGGATGTCAAAGTCGTCGGGCCTGAAGAGGAGATGGACGAAGCTGCCTCCTGCAACATGGGCTTTGACATGTGCCGGAAGGACAAGGACTGTGACTATTTCTTCCTCTTGGACATTCAAGTGGTCTTAAAGAATGAGAACACACTTAAAATTCTCATTGAACAAAACCTGCCTATTGTGGCACCGATGATAACTCGAGTTGGTCGACTGTGGAGCAACTTCTGGGGAGCCCTGAGTGCAGAAGGCTACTACGCCCGGTCCGAGGACTACGTGGACATAGTTCAAGGACGCAGAGTGGGTGTGTGGAATGTCCCGTACGTGTCCAGCGTGTACCTGGTGAAGGCCAGCCTGCTTCGATCGGAGCTCGCAGACTACGAGCTGTTTAACTCAAACACCTTAGACCCCGACATGGCTTTCTGCCACAACATCCGCAACAAGggaatCTTCATGTACGTAACCAACATGCACACTTTCGGCCGCATCCTGTCAACAGACAACTATCAGACGAGCCATCTTCATAATGATCTGTGGCAGATCTTTGAAAACCCAGTGGACTGGCAGGAGCGCTACATTCATGAGAACTATACTTACATCATGAAAGACAAGCTGATTGAAAATCCTTGTCCCGATGTGTACTGGTTCCCAATTTTCTCTGATGTTGCTTGTAACCACATTGTTGAAGAAATGGAACATTATGGGAAATGGTCAGGAGGAGGCAATAAGGACACCAGAATCCAAGGTGGCTATGAGAATGTCCCCACTATCGATATCCACATGAATCAAATCAACTTTGAAAAGGAATGGCACAAGTTCTTACTGGAGTATATAGCACCGATAACGGAGAAAATGTATCCTGGTTACTACACCAAGTGTGCCTCTCCCCTGAACTTTGTGGTGAGGTACAAACCGGACGAGCAGCCCCTGCTCGCCCCTCACCACGACGCCTCCACATTCACTATTAACATAGCTCTCAACAGCAAAGACGTTGACTACCAGGGTGGAGGATGCCGGTTCCTCCGCTACGACTGCTCGGTCCAGGCTCCCCGTAAAGGCTGGAGCCTCATGCACCCGGGCCGCCTCACCCACTACCACGAAGGCCTGCCCACCACCGCCGGCGTGCGCTACATCGCCGTGTCCTTCGTGGATCCCTgaacgccccccccccctgaaGATGGCCTCACATCACCGGCGAGTCCAGACCAAacaggagagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagggctgcAGCTTTCAGCATCCCAACGCAGCTTCACCTTCTGATCTGGAGCGGTGACCAGCGCTCTTTCCATTAGTTCATTTCAGGGTTCATAAGCATTTTAACCATGActgtgtgtttctgaaaatgtcagtcgacattatacaataagaatacacatctgtgttaaagttcaccctcagaggtttaactataaaacacttattaatcacatattatt

Function

GO: NA

KEGG:

id description
K00473 PLOD1; procollagen-lysine,2-oxoglutarate 5-dioxygenase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75264 lncRNA downstream 36869 36870769 ~ 36879159 (-) True G56213
TU75266 lncRNA downstream 117832 36797443 ~ 36798196 (-) True G56215
TU75244 lncRNA downstream 157377 36757955 ~ 36758651 (-) True G56197
TU75242 lncRNA downstream 159557 36756213 ~ 36756471 (-) True G56195
TU75238 lncRNA downstream 162974 36752757 ~ 36753054 (-) True G56191
TU75302 lncRNA upstream 23316 36975594 ~ 36980336 (-) True G56245
TU75315 lncRNA upstream 72656 37024934 ~ 37025355 (-) True G56250
TU75335 lncRNA upstream 114387 37066665 ~ 37118456 (-) False G56265
TU75351 lncRNA upstream 150458 37102736 ~ 37118149 (-) True G56279
TU75336 lncRNA upstream 164892 37117170 ~ 37118456 (-) True G56265
XM_039799935.1 mRNA downstream 20488 36884803 ~ 36895540 (-) False rhoaa
XM_039799934.1 mRNA downstream 20530 36884803 ~ 36895498 (-) True rhoaa
XM_039800964.1 mRNA downstream 49726 36850850 ~ 36866302 (-) True gmeb2
XM_039800296.1 mRNA downstream 111358 36780301 ~ 36804670 (-) True stk35
XM_039801554.1 mRNA downstream 171897 36723238 ~ 36744131 (-) True LOC120559655
XM_039800467.1 mRNA upstream 32607 36984885 ~ 37001139 (-) True phc2a
XM_039801690.1 mRNA upstream 101509 37053787 ~ 37061695 (-) True LOC120559725
XM_039801692.1 mRNA upstream 101509 37053787 ~ 37061681 (-) False LOC120559725
XM_039801689.1 mRNA upstream 101509 37053787 ~ 37061509 (-) False LOC120559725
XM_039800793.1 mRNA upstream 204090 37156368 ~ 37172204 (-) True tbc1d25
TU75262 other downstream 20538 36884865 ~ 36895490 (-) False rhoaa
TU75263 other downstream 20538 36884865 ~ 36895490 (-) False rhoaa
XR_005639341.1 other downstream 171896 36726596 ~ 36744132 (-) False LOC120559655
TU75206 other downstream 191819 36681899 ~ 36724209 (-) True G56160
XR_005639240.1 other downstream 356069 36559389 ~ 36559959 (-) False LOC120559361
TU75311 other upstream 36507 36988785 ~ 37001151 (-) False phc2a
TU75312 other upstream 36507 36988785 ~ 37001151 (-) False phc2a
TU75428 other upstream 420357 37372635 ~ 37373316 (-) True G56335
TU75491 other upstream 669646 37621924 ~ 37622981 (-) False G56376
TU75494 other upstream 669646 37621924 ~ 37622981 (-) False G56376

Expression Profile