RNA id: XM_039799951.1


Basic Information

Item Value
RNA id XM_039799951.1
length 2827
RNA type mRNA
GC content 0.56
exon number 12
gene id slco4a1
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 34333598 ~ 34375503 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTTACACCGCGGTTACAACTCGCTCGCTCCCTAAAAGAAGGGCGCTAACCACTGTACAGCGTTGCAATTATTTATACCACTTTTGTAGCCTTTTTCCCCCACGAGACACGTCACGAATGACAGAACGTTATGTGAGAAGAACGGACTAATACACGTGTAACTATTTCAAGGATGCCATTGCTCAACGTCAGTATGAAGCAGTCTTTACAACCTGTACAACCTTGTACAGATAGGCAAACAAAAGCACCTGAAGAGCCTTAATGAATATTCAGCACTGTGGACACATGGAGCACGCGATACAAGCCAACAATAGATTAGAGACGAGCCTGACAGAGATCCTGACCACAACGCATTCACCTTGAGCATCAGCTGATTCACATTTCCCCTCTTTTCTGCATTGTGGTTGTAAACATATCACTCTATCTCCCCAGTTCAAAGACCTCCCACGTCTACCCTCCTTCTGTGCCACGGGACCCTCACAGTGCCCCTCAGAGGGGAAATGCCCGTCTTGCTCAATGCCGACGCCTCCTTCAGCTCCAAGCAGGAGCTGCTGGACCTTCAGGACTGCCCTCTCAGCGGCGGTCCCTCCCTGGACACCCCCAGCCCCCCAGACTCCCAAACAGGCAGCCCAGTAGGCTCAGGCCCCAGAAGCCCTCTCAGCCCCGGGGCAGATGGCCCTGTTCGGCCCCACATTTTCACCGGGGCTTCCACACTCCCGGGGCAGCTATACGGAGTGGAAACAAGACCGCATGCAGAGACACCACTGGGGTTAAAGCTGATCCCCACCGATCCGGATCAGCTATGTGGCTGGGGTGCTCTGGCGCCCAAAGCTGTCCAAGTGTTCAACACCCCTCGTTGGGTGCTGTTCTTCCTTTGCGTGGCCTCGTTCCTCCAGGGGATGATAATCAACGGCTTCATTAACACAGTGGTCACCTCCATTGAGAGGCGTTTCGACCTGCGCAGCTACCAGGCCGGCCTCATCGCCAGCTCCTACGACATCGCCGCCTGCGTGTGCCTGGCGTTCGTCAGCTACTTCGGCGGGACGGGACACAAACCTCGCTGGCTGGGATGGGGGGTGGTGATCATGGCACTTGGTTCTCTGGTGTTTGCCTTGCCTCACTTCACCACGCCCCCTTACCAGGTCAGCCTGACCGAGCCGACAGTGATGTGCTCTGATAACCGTACCAGCCCGTGCCAGGACAAGGACGGCGGAGGACTGTCCAGCTATCGTTTTGTGTTCATGCTGGGCCAGTTCCTCCACGGTGTGGGTGCTACGCCTCTCTACACGTTAGGAGTCACATACCTGGATGAGAATGTCAAGTCCAACTATGCGCCTGTTTATATTGgGATCTTCTACACAGCGGCCATTGTGGGTCCGGCCGCAGGCTACCTGCTGGGAGGATACTTCCTCAACATTTACACCGAGATCCACCTGACGACAGAGATGACGCCAGAGAACCCTCTGTGGGTTGGGGCTTGGTGGATCGGCTTCCTagcaggaggagcagcagctctGCTGATAGCATTCCCCATCCTGGGCTACCCGCGACAGCTACCGGGCTCTCAGGAGTACGTGGCCATGCGAGTGTCTGAGGCCCACCAGCTTAAGGACGGAAGCCAAGCCACAGCCTCAGACCCTCAGTTTGGCAAATCAGTCAAAGACATGCCAAGgtCTGTGCTGCTCCTCTTGAAGAATCCCCCCTTCCTGTTCCTCTGCTTGGCAGGGGCTACGGAGGCCACCCTCATCGCTGGCGTGTCCACCTTTGGTCCAAAGTTCTTAGAGTCACAGTTCAGTCTCAGCGCATCAGAGGCCGCGACATGGTTCGGATACATGGTGGTACCAGCGGGTGGTGGCGGCACCTTCCTGGGCGGCTACATCGTGAAGAGATTGAACCTGCGCTGTCGCGGCATCATCCGTTTCTGCATGATGTGTGCGATGGTCAGTCTGCTCGCCATCTTCATCTTTCTCATCCACTGCCCCAACGTGCCCATGGCTGGTGTCACGGCGTCATACCAGTACGATGTGATGGCGAAGCACCAACTGGACCAGTACAAAGACCTGTATGACAAGCCCGGCAAGCTGCACCTTAGAAACAGCTCTTCTTTAGAGGAGAGCCTGACCGTGGGCTGTAACGCAGGCTGCAGTTGTGTCAGAGAGCTGTACAACCCTGTGTGTGGGGCGGACGGTGTGATGTATTACTCCCCCTGCCACGCCGGCTGCAGCTCCATCAACCACACCGATGGCTCCACAGGCAAACAGGTGTACTCTGGCTGTAGCTGTGTGGTGGGTAATGTGTCCTGGGGCGAGGAGGGCTTCGCTCTGACAGGGAAGTGTGGCAGCTCCTGCCACCACATGCCAgccttcctctccttcctcttcatcatcatctcctTCACCTTCCTCTGTAGCATCCCTGCACTCACCGCCACACTCAGGTGTGTGCCAGACAGCCAGAGATCCTTTGGACTGGGTATCCAGTGGATTGTGGTGCGCACACTTGGTGGGATTCCAGGACCCATAGCATTTGGCTCTGTGATTGACATCTCTTGCTTACTGTGGCAGGATAAGTGTGGTGAGCAGGGCTCCTGCTACCTCTATCAGAACTCAGCCATGAGCCAGTACACACTAGTAGCTGGCATCATCTATAAGgctttaGGGACAATCTTTTTCCTGTTAGCCAGCATCCTGTACCAGCCTCCTCCTGAGTCACCTCAGAGCAGCTGTGAGAGCACCGACCACGGACTAGGAGACATGGGCGACCTGCCTGTCAAAGACCTGCCTGAAGACGGCGTCATCGTCAACCTGCACGCCAGGTTATGACGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73659 lncRNA downstream 66565 34266795 ~ 34267033 (-) True G55166
TU73627 lncRNA downstream 204802 34128238 ~ 34128796 (-) True G55137
TU73611 lncRNA downstream 206103 34117904 ~ 34127495 (-) False G55124
TU73609 lncRNA downstream 211078 34117904 ~ 34122520 (-) True G55124
TU73623 lncRNA downstream 226291 34097507 ~ 34107307 (-) True G55133
TU73718 lncRNA upstream 4562 34380065 ~ 34407170 (-) False G55190
TU73721 lncRNA upstream 4562 34380065 ~ 34407170 (-) True G55190
TU73727 lncRNA upstream 17810 34393313 ~ 34407170 (-) False G55190
TU73741 lncRNA upstream 181678 34557181 ~ 34557690 (-) True G55203
TU73906 lncRNA upstream 454866 34830369 ~ 34878720 (-) True G55328
XM_039799249.1 mRNA downstream 42529 34236566 ~ 34291069 (-) True ntsr1
XM_039801847.1 mRNA downstream 167634 34134259 ~ 34165964 (-) False snphb
XM_039801846.1 mRNA downstream 167634 34134259 ~ 34165964 (-) True snphb
XM_039801837.1 mRNA downstream 372436 33955326 ~ 33961162 (-) False LOC120559811
XM_039800655.1 mRNA upstream 415110 34790613 ~ 34842286 (-) False plagl2
XM_039800653.1 mRNA upstream 415110 34790613 ~ 34842286 (-) True plagl2
XM_039800654.1 mRNA upstream 415110 34790613 ~ 34841640 (-) False plagl2
XM_039800673.1 mRNA upstream 512282 34887785 ~ 34899218 (-) True LOC120559153
XM_039800672.1 mRNA upstream 512282 34887785 ~ 34899215 (-) False LOC120559153
TU73658 other downstream 42711 34290406 ~ 34290887 (-) False ntsr1
TU73607 other downstream 206103 34024018 ~ 34127495 (-) False G55124
TU73610 other downstream 206103 34117904 ~ 34127495 (-) False G55124
TU73620 other downstream 240480 34087970 ~ 34093118 (-) True G55131
TU73247 other downstream 1446308 32880193 ~ 32887290 (-) True G54834
XR_005639223.1 other upstream 894395 35269898 ~ 35277854 (-) True LOC120559165
XR_005639224.1 other upstream 894397 35269900 ~ 35277854 (-) False LOC120559165
XR_005639222.1 other upstream 894397 35269900 ~ 35277854 (-) False LOC120559165
TU74116 other upstream 1029101 35404604 ~ 35409766 (-) True G55492
XR_005639221.1 other upstream 1511598 35887101 ~ 35898736 (-) False si:ch73-70k4.1

Expression Profile