RNA id: XM_039800071.1


Basic Information

Item Value
RNA id XM_039800071.1
length 938
RNA type mRNA
GC content 0.55
exon number 8
gene id LOC120558819
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 25440361 ~ 25443840 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCTTTAAACAGGTGTGTtcaagcgctatataaaaaggTGCACGTCCCCCTCAACTTCTACTGAAGACAGTCACAATGAAGTTCGTGATCTTGGCTTTGTTTGTCGCTGGTGCCTACGGGTGCGGCCTGCCCACTTACCCTCCCGTCATCACCAGGGTGGTTGGTGGAGATGATGTCCGTGAGAACAGCTGGCCCTGGCAGGTGTCTCTGCAGTACCAGAGTGGCAGCAGCTTCTACCATACTTGTGGTGGCACCCTGATCTCCAACCAGTGGGTCCTCACTGCTGCTCACTGCATCAGCAGTCGCACCTACAGAGTCTACCTGGGAAAACACAATCTCAAGACCAACAATGAGGCTGGTTCCATCGCCATCAGCCCCACCAAGATTGTCGTCCACGAGAACTGGGACTCTTACAGAATCCGTAACGACATTGCCCTGATCAAGCTGTCAACTCCTGTCACTTTCTCTGACTCCATCATGGCCGCCTGCCTTCCCAACTCTGGCGACATCCTTCCTAACAATGCTCCCTGCTACGTCACCGGCTGGGGCCGTCTCTGGACCGGAGGTCCTCTTGCCGACATCCTGCAGCAGGCCCTCCTCCCTGTGGTCGACCACTCCACTTGCACCCGGTCTGACTGGTGGGGCAGCCTGGTCACCAGCAACATGGTCTGTGCTGGAGGAGACGGACAGCTGGCTAGCTGCAACGGAGACTCTGGCGGTCCCCTGAACTGTCAGAACCCTGATGGCTCCTGGGACGTCCACGGTGTGGTGAGCTTCGGCTCCAGCATGGGATGCAACTACCCCAAGAAGCCCTCCGTCTTCACCAGGGTCAGCGCCTACATCTCCTGGATCAACAACGTGATGACCACAAACTAAGATGTTGGCTGTTCCACTTCATATACTGTAAATTCATCAAATAAAGCATGTAGTGGCTAATA

Function

GO: NA

KEGG:

id description
K01346 CELA2; pancreatic elastase II

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639163.1 lncRNA upstream 424963 25009989 ~ 25015398 (+) True LOC120558677
TU70673 lncRNA upstream 480258 24959816 ~ 24960103 (+) True G52892
TU70634 lncRNA upstream 495210 24940795 ~ 24945151 (+) False LOC120559118
TU70635 lncRNA upstream 495210 24942240 ~ 24945151 (+) True LOC120559118
TU70586 lncRNA upstream 687181 24751895 ~ 24753180 (+) True G52827
TU70912 lncRNA downstream 365873 25809713 ~ 25811047 (+) True G53056
XR_005639231.1 lncRNA downstream 551393 25995233 ~ 25997094 (+) True LOC120559215
TU70971 lncRNA downstream 627745 26071585 ~ 26076664 (+) False G53096
TU70974 lncRNA downstream 627745 26071585 ~ 26076664 (+) True G53096
TU70988 lncRNA downstream 652519 26096359 ~ 26099635 (+) True G53109
XM_039800069.1 mRNA upstream 14424 25422882 ~ 25425937 (+) True tmem51a
XM_039800294.1 mRNA upstream 25608 25409728 ~ 25414753 (+) True LOC120558932
XM_039800292.1 mRNA upstream 34411 25188706 ~ 25405950 (+) True LOC120558931
XM_039800293.1 mRNA upstream 34411 25188709 ~ 25405950 (+) False LOC120558931
XM_039800820.1 mRNA upstream 256130 25174578 ~ 25184231 (+) True prdm2a
XM_039800077.1 mRNA downstream 88261 25532101 ~ 25714390 (+) True prdm16
XM_039800080.1 mRNA downstream 134560 25578400 ~ 25714390 (+) False prdm16
XM_039800072.1 mRNA downstream 150217 25594057 ~ 25714390 (+) False prdm16
XM_039800074.1 mRNA downstream 150217 25594057 ~ 25714390 (+) False prdm16
XM_039800076.1 mRNA downstream 150217 25594057 ~ 25714390 (+) False prdm16
TU70648 other upstream 483031 24953442 ~ 24957330 (+) True G52871
TU70197 other upstream 1675208 23759234 ~ 23765153 (+) False tmem201
TU69870 other upstream 2593423 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 2877840 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 2880033 22556329 ~ 22560328 (+) True G52210
TU70864 other downstream 299770 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 627745 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 908620 26352460 ~ 26353463 (+) True G53232
XR_005639211.1 other downstream 935836 26379676 ~ 26382295 (+) True LOC120559113
XR_005639212.1 other downstream 935836 26379676 ~ 26382295 (+) False LOC120559113

Expression Profile