RNA id: XM_039800082.1


Basic Information

Item Value
RNA id XM_039800082.1
length 7364
RNA type mRNA
GC content 0.46
exon number 14
gene id prdm16
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 25532101 ~ 25714390 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGATCGGAGATGCGGGGAGGGGTCTCCGCCGCAGATCCCTCAATCCTTTTGGCTGGAGATAAGACGAGGAGGAGTGGCCGACGGGTAACCGAGAGAGCACCGAGGGGCAATAGGGAATCactaatgagagagagagagactcagaaagagagagagaaagagagagagagagactcatcATCATCAAAGACGCGCTCACTGACTAGATTAGAGAGTAGCCCAGCAAAGGAGCGTCGGGCTTCATCCAGCCAAAGGGAGCGATCACCGACCGTCTGCAGCGCGCCTGGCCGCTCCGCGACCTCCTCTCCCCGGCCTTGTCCAGTCTATCGCCCCGCTCCCTCTCCGGTAGACCTACTATGGGTTGTGTCGCCAACTCCACCGGGACTGAAGTACTACTGCAGCTGGAGGCTCTCCGCAGCGCCGCGCAACTTTCTCAACTATTTCATCTCACGGAGAAAAGAAAGaTTTATTATAAAGCTGTCCGGGACATTGACGCAGGGGAGGAGCTCTTAGTGTATATGAAGGACGGAATTTTCCCCGAGGGATCCATGGCACCCAACCTACAAGatGAACAGATGTACCGCTGTGAAGACTGTGATGAGCTGTTCTCCTCAACACTTGAGTTGCGGCGGCACCAGAAGTACTCGTGCTCCAGTTCCGGCTCCATCTTTGACACACTGAGAGAGGACTTCAAACAGGAACGCGAGGACAGCGACGAGCCTGTCCACGAGTGTAAAGACTGTGAGAAGATCTTCCCAAATGAGTACAGTCTTGGCCAACACATGATAGTCCATACAGAGGAGAGGGAGTACAAGTGTGACCAGTGCCCCAAAGCCTTCAACTGGAAGTCCAACCTCATCCGTCACCAGATGTCACATGACAGTGGCAAGCGCTTTGAGTGTGAAAACTGTGATAAGGTACAGCATACCCGGCACGTGTTCACAGATCCCAGCAACCTTCAGCGCCACATCCGCTCCCAGCACGTGGGGGCGCGCGCTCACACATGTCCTGAGTGTGGCAAGACTTTTGCCACCTCGTCAGGCCTCAAACAGCATAAGCACATCCACAGCAGTGTCAAACCCTTTATCTGCCCTGATGGGCTGCGTCTTTTTGCTCCCCCAGGCGAGGTGTGCCACAAGTCCTACACCCAGTTCTCCAATCTCTGCCGCCACAAGCGTATGCATGCTGACTGTCGCACCCAGATCAAGTGTAAGGACTGTGGGCAGTTGTTCAGCACTACCTCCTCCCTCAACAAGCATCGCCGCTTCTGTGAAGGCAAAAACCATTATGGCTCGCCGGCAGGAATGTTCAACCCTGGCATTCCCATGAGCTCCAGCCCCATCATGGCCAAGGCCAAGTCCCACCATCCCCACCTTCAAGGTCTAAACCAGTCAGGTTTAGGCTTCACTGACTACTTTCCCTCCCGACCTCACCCTCACGCTGGATTGCCCTTTTCCCCAGGACCCCATGGCTTCCCATCCCTCCCTCATGGTTTCCCAGGTATCTTCTCCCCATCACTGTATCCACGACCACCTTTATTGCCGGCTAGTCCGCTGCTAAAGCAGTCAGGAGGCAGTCAGGAGGTGAAACTGCCTCGGAGTCCCCTAGATGCCCCTCCACTGTCCCTGGTTAGCTCCACAAACAGCAATGGAGGTTACAGTTTGAGTCGGctggaagacagagaaaaagagaacaaaCTAGATTTGTCTTCTGGAGAGGCCAAGCCAAAATCTAAGATGGCAGACATGTCTGACGCTAGTGACCTTGAAGATGTTAATACCACAAGTGGGACAGATTTGGACACCACCACTGGTACTGCTTCAGGTGATGGTTCTGACCTGGAGAGCGATGGAGAGAGTGAACGTGAGCGAAATGGTAAAAGAAGGAAGCCGTCTGGGGCCATATCAAGTCAAGAAAGCCACCAGTTAGAAGACACAAACAGTGCGTTGATATCAGCCGTGTCTAGTTCTGGGAACTTTGCTATCGATCGTCCCTTTCTTTCTTCTGCATCATCCCAGCACTCCTTCTTCCCTCCACCTGATGAGCAAGCCCTCCCACCCACCAACACAAATGCCAATGCATCCACAGATTCCATCAAAGCCATTGCCTCTATTGCAGAGAAATATTTTGGTCCAGGTTTGATTGGTCTCCATCAGGAGAAGAAGATGGGTCCATTGCCCTACCATTCCATGTTTCCCTTTCAGTTTTTGCCCAACTTTCACAACTCCCTTTATCCCTTCAGCGCTGATCGAGGTGCCCTCAATCCTAGCATGTTCTTCAAAGCAGAGCCCAAGTCACCTCGCGAGCAGCTGCACAAGATGGTTTCTGGTGCCCCAGGAGCTCCTGCTTCCACAGGGGAGTCCCCGTTTGATCTCACCACAAAGCCCAAGGAGACCAAATTAGCTCCTCCCACCCCAACAAACCCTTCAAACCCTAGTAGTACTGGGAGCAGTAGTGGACATTTAGCAATATCTAGCGGTGAAGAACAGCCATTGGACCTCAGCATTGGTGTCCGGAGCCGAGGTGGTCATAATGGTGTGGCAGCTGAGCCACAAAATAGAAAGAACCATATCTTTGGCATTGGAAAGGGGGTTTCCATCAAGGATGAAACCCCATCTGGGTTTCCACACGCCCATTCCCAGTTGTTGCCCCAATCCTCCATCGCCCAGCACCAGCAGCCCCAGGCACAGCCACACCAGCCACCACCCCTTCACTACGCCAAGCCCTCAGCATTCTTCATGGACCCCATATACAGCAGGGTGGAGAAGAGGAAGCTACTCGACCCCGTAGGAGCTCTGAAGGAAAAATTCCTCAGGCCCTCACCGCCACTCTTCCATCCACAGATGTCAGCCATGGAGAACATGACAGAGAAGCTGGAGAGCTTTGGCGCTCTAAAACTGGACGTGCCGCCCAATTCGCTGCAACACGCTCATCCACTGTTCAACTTCCGCTCACCACCACCCTCCCTCTCAGACGCCATCCTCCGCAAGGGCAAGGAGCGTTACTCCTGCAGGTATTGTGGGAAAATATTCCCTCGTTCTGCAAACCTCACCAGACACTTGCGGACACACACAGGGGAACAACCCTACAGGTGTAAATACTGTGACCGCTCGTTCAGCATCTCATCCAATCTTCAACGCCACGTCCGCAACATCCATAACAAGGAGAAACCCTTCAAGTGTCACCTGTGCAACCGCTGCTTCGGTCAGCAAACCAACCTCGACCGCCATCTCAAGAAGCACGAGCATGAGAACATTCCTGTGAGCCAACAGTCCGGGATGCTTTCCAACCTAGGAACCACCATCTCCTCCCCAAACTCCGAGCCAGACAATCATGCACTTTTAGATGAGAAGGAGGACTCATACTTCTCAGAAATCCGCAACTTCATTTCCAACAGTGAGATGAACCAGGCCTCCAGCTCCTCGGACAAGAGATCAGACCAGGCTGAGGAGGAACGCCCACCCAGCCACAGTTTGTCCAACTCCAAGCTAAGACTCCAggggctggaggaggaggaagaggaagtggagggtgatgatgaggaggaggaggaaggcagCCTAACAGAGAAGTCTCACGACGAGGCGCCAGAGTCCCCGTCTCCCGTCACAACAGGAGTGTatgaggaggacgaggaggaggaagagacggAGACGGCTCCATTAGCTATGAGCTATGAACACACTCGCAGGTGTATAGAGGAGGAGGGCTCTCTCTTGGACCTGGAGGGTCTGCCCAGCTTTCCCAAGAGCCTGGAGGGCTTACGTAAAGCAGCCAGAGACGAGCAACCCTATGATGTTAAAGACCTATTTAACACTTCACTAGAGTCGGAGGCATTGAAAGAGACATTGTACAGGCAGGCTAAAACCCAGGCTTATGCAATGATGCTGTCTCTCTCGGAGAACAACCCTTTGCACGCGCCCTCCCAGAACTCTCTGGACGCTTGGCTGAGCATGGGAGGTGGACCGTCTGAGACGAGCAGCTTTCACCCACTCAACCACATCTAgacaagagaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagatgggggggggaagtgggaggaggagtaggaggaACATTAGTTTCGCAAATGGATAGAAACAAGAGACTGAGTGGACATGAGTTGTGAGAAACGTGGAGGCCAGAGAAGAATTCAGTGTCACATACATTCAAGATAGAAAGAATATGTTtgtgtggatatgtgtgttcatttgtgtgtgtgtgtgtgtgcgtgtgtgtgcgtgtgtgtgcgcgtgcgagtgtgagaggagggagagattgTCCCTAGGTGAGGCGTCTCGCAAGACTCTGTCAAAATGAAAGCACTGCTAAGCTCCTGTTGATGTGAAGGACATGATGAATGCTTCTCAACAGCATTGAAACTCTGCATTACTCTTATCCTCCGCAAGTCCACAAGGCTCACTCCAGCACCACAGAGACCCTATGTAAGGCTCTCATAAAGACACTTAATGACTAGTACGTCTCTAAAGTCTGTGTACACCGCCTACTTCAAGCACTGCAGCATCAGCACTGCATTAGCACTGCATGTCCACAAGGTGGTGTTGTTTCACCAGGAACATAGTGGGCGCGTGCACTATTGTCTCCCAAGTTTTTCCCCACCAATCACAGGTGACTCATTTACTGATCTTGTTTCAGTATAACTGCAGAATCAACAATAGCACCACACTAAATGTTACTTGAGGAAATGACCGTACCAGTAGACTGTTGATTTTTGAATGATTACATGGAAATTATGTTCAATGTTCAAATGTGCACAGCAACTGGTGATTTTGATGAGCTGTCTGGGACACTAGCCATTGTAATTGGTTACCCAATTTGATCATGCTGAAAATGAATTTAAATCATACTCGAAAAATGAGGAACGTCTTTCTCTGCTTGTTTATTTCATCGTCATTTGttaattttatttactttctctCCTATTAGATACCACAGTATTGTTTTGTTGTAGGCACCACAGTGCTAAATTgttaatataattattttagaGAAGGACCAAAATTGTATGATATTGTCATATGATGTACAAAATAACCTAGATGTTCATAGCAAGAGTGGTATGTGCCAAATAACCCATAGAAAATGTTTTGTTCTCTGACAATCATTTCATTTCCAAGGGGCTTGCATTTGCTGtcatactttttcttttcttattacgctcttatatatttgatttcagaagtgtgtgtgtgtatgtatttatttttggttgttttgtcaTGACTGGAGGAGTGAAAATGAAGGCATGtcattttattcctcttttcttGATACTGAAGGAATGAACGCCTATCAGAACGTGAGGGAGATTCAGAATCTCTGGTTTTGATGCGTTAGTGTGCCAAAATTGAAAGAACCCATGaaattaattgtttttatttatagtgaaaAATAGCTTTAGTTAGCTTTAGATCCTATTTGGCATTGTTAACGTCCTGcagtgtttagttttttttcttatttcagTCCAACCATTTTACCCAGTATGCTGAATGTGTCTTGTTCAAGTATtaagttggggggggggggggcagactTGGACaacttttactgtaaatgtcagaaaagggcattacattgttattattgaATCTGACCAGTTTCTACCACACCAAGCTCCCTTTCCCCTCTGTTTTTCATTTGATACATGTAGTGTCAACAATGAATACCCTTTTTAAATTAGTTTGATATTACATGGTTCAAAAGTCTAAAACATACAGCCACGTCTACATGAACATCTGGTCTTCGGATTATGCAAGAAAGAAGGCGAGGActcataaaagacaaaaaagagagagtAAACTAAACCCCAGATAGTGTTAAAATGGACATCATAATTATGCTGGTTGGTCCTTCTAACACATGCATACAATGTTAATTCTtgacagagaaaacagaaataCTTGATCATGAGTTTAACTTTATATTCCCTGTTCTTCTGAGATCATACTAAAAACTCATTCCATGTGGTCTTCAAGGTAGCTGTGCCATGGGGGGCATGAGTCATTAACTGTAGATAACTGTAGATAGCTGCAGGAGCCGGGGGGGTGAGCATTGTTGATCATTGTTGCCTTGGTCCTCCCTGTGAATACTGGGACTCTCAGAGCTAGGCCTGATGCTGTATTTTCAAACTAGTACTTAAACCATATGGGTCCAAGCCATAAATTGTTCAGGCTTAGGTCTCTAGAACATAGGACACAGATCACATTTTCAGACTAGTTTCACTTTCAGTAGATGAGCAACTCGAGCTCGACATGGAGAGATATGAAAAATCTGAAACAGAAGCACTGTAATTTTTATTCATGACAGCAGGTGGTAGTGTGATGCTAGGACTGCTGCATCATCTCATTTTTCTAAAGACAGacgtcttttttttataattatactGAATGAGATTTTATTCATGGTAAACACATTGTTTTCCCAAGTCGTGGTTATAAAATGTAAAGGCTTGGGTTGCTAAGTTTTTAGGTTGACTATATGTAGTAATTCATGTCATGGACTACTGTAATAAGTAAGCGCTGTGTAAAGCAAAGGAATTGAAGGCATTTAAGTATTCCATTTTGCCAACTTCAGAAAGTATTCAGGCAGATGGTCGCTGAAATATGTTTCAGCATAATAGAACATGGTTGCTGTTTTCCCCCCACTGTTACAGGAGAAagtaaaaatatacatattgtttctttttaactgtatagtattttaaagaaagaaaagcaatgGTGCATTTGTCTGAAGAAAACAAATCATTGAAAAATATGGGTTTAAATGGATGgtgcttgttttgtttgaatcTGAGTTGTATATCGCCTCTGTTATGtttattgaaaacaaacaaacaaaaaaagatattgtGCATGACGTGTTTAGCAGTCATAATGATGTCCATTTGTGAAATGTGTATCAAattaaaaaatgagaaaaaaaaagaaaagaaaaaaatgaatccGTAGATGCACTTATTGTACATGTGGTTAGTCTGGTAGATTTGACTTCAAGTTCTTGACTGCCTTACAGATGTTGGGCAGCTGGCTCTGAAAGACATTAGAAAAGACTTGTGGGAGAAGACataatgaaaaacaataaaGGATTGTAGAATAATATTGAACAATTCTGAAAATTGCAGTTCTTTTGATGCTTGTGATTATTGAAGATGTACTTTAGAGAAATTTCATTGAAAAGATATGACTCTGATGTTAATTCTGTAGAATAGCAATGTATACCAAATGTAATCTTTCCAATGCTATGAAGAATTTATACATGAAATTGATATGCAATAAAACCTGTGTGCTTTTTAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639163.1 lncRNA upstream 676275 25009989 ~ 25015398 (+) True LOC120558677
TU70673 lncRNA upstream 731570 24959816 ~ 24960103 (+) True G52892
TU70634 lncRNA upstream 746522 24940795 ~ 24945151 (+) False LOC120559118
TU70635 lncRNA upstream 746522 24942240 ~ 24945151 (+) True LOC120559118
TU70586 lncRNA upstream 938493 24751895 ~ 24753180 (+) True G52827
TU70912 lncRNA downstream 95323 25809713 ~ 25811047 (+) True G53056
XR_005639231.1 lncRNA downstream 280843 25995233 ~ 25997094 (+) True LOC120559215
TU70971 lncRNA downstream 357195 26071585 ~ 26076664 (+) False G53096
TU70974 lncRNA downstream 357195 26071585 ~ 26076664 (+) True G53096
TU70988 lncRNA downstream 381969 26096359 ~ 26099635 (+) True G53109
XM_039800071.1 mRNA upstream 247833 25440361 ~ 25443840 (+) True LOC120558819
XM_039800069.1 mRNA upstream 265736 25422882 ~ 25425937 (+) True tmem51a
XM_039800294.1 mRNA upstream 276920 25409728 ~ 25414753 (+) True LOC120558932
XM_039800292.1 mRNA upstream 285723 25188706 ~ 25405950 (+) True LOC120558931
XM_039800148.1 mRNA downstream 29199 25743589 ~ 25748321 (+) False tprg1l
XM_039800141.1 mRNA downstream 50770 25765160 ~ 25793225 (+) False tp73
XM_039800143.1 mRNA downstream 54574 25768964 ~ 25793225 (+) True tp73
XM_039800142.1 mRNA downstream 56581 25770971 ~ 25793225 (+) False tp73
XM_039800145.1 mRNA downstream 57053 25771443 ~ 25793225 (+) False tp73
TU70648 other upstream 734343 24953442 ~ 24957330 (+) True G52871
TU70197 other upstream 1926520 23759234 ~ 23765153 (+) False tmem201
TU69870 other upstream 2844735 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 3129152 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 3131345 22556329 ~ 22560328 (+) True G52210
TU70864 other downstream 29220 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 357195 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 638070 26352460 ~ 26353463 (+) True G53232
XR_005639211.1 other downstream 665286 26379676 ~ 26382295 (+) True LOC120559113
XR_005639212.1 other downstream 665286 26379676 ~ 26382295 (+) False LOC120559113

Expression Profile