RNA id: XM_039800106.1


Basic Information

Item Value
RNA id XM_039800106.1
length 3737
RNA type mRNA
GC content 0.45
exon number 18
gene id si:dkey-21c19.3
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21032895 ~ 21045968 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGCGATGGTTAAGTGTCCTATTCAGCCATGTTGTGGTTTTGAATGAGGAAGAAGCGGGAGATAATAGTCTTCTACGAGTTTATATGCAATTTAAAGTCACGTTAAGGATATATAAACAAGTTAGGTTGTGACTCAAAATGATAACCGTTTTCCCGAACGCGTTGGTTGCGACTTGTCGCATTCCTATTGGAATTTATACATACTTCCATTAATTAGCCGTGTTGCTAGCAACGTTAGCTAGCGAGGTAGTTAGCACAGCGTGCTAGCTAGGCAACTAGCTTAttctcagctagctagctaacggttaGCTCGTTTTGTGAGAAAGTAAAATGATAATTGTAAGAAGTGTTAGCCTTTAAAATAGCCTCAGCTAACCTGCCTCGGTTGAATGAAGCGCATTAGCTTCATTTGGTTTGATTATATTGACAGGTAGACTGAAAGCAGCTATAGCGATTTATCTTTAAACCAGTGGCGTTATTTCTAAAACTTTTCAGTCATGTTGAATAAAATCTACGAATGGGTCAGCTTTGGTAATGTTCGCAATGGTGTACCAGCTGCGGAGCACTCTGATGCACACCGGGGATCGGGAGATGGTCCGACGAGGAGGAAAAGACCAATTGAATGTTTGGAAGATGGACATAACATCGACCAAGATGGCTTAATCATAAAGAAATCTCGAATGGGAGATCTTATTGACACAGTCAAGGTTGCAGCTGAAGGGGTTAAGAGTCACAGCTTCAGTGTGGCAACATGGATGAGGAACAATGTGAGCCCTGCCTTGAGAAATATACTGCCAGCCTCCCCTGGTCCTCCACCTGGAGAACCTCAGCCACAGCCCTCTACATCAGCAGCAGTCTGGGCTGGGATGCCGATTGTTGAAAGGAACTGTATGGATGAGACATTCGCTGCTCCCTCGACAACTTTGGAGTGGAAAACATCCAAATCGGAATGGTTGCGCAATGAGAAGTCCATCATGGGATCAAAAGTCTGTAGGCGACAAGTATGCATGAGTCCTACACATCGTGAAGTGCCAAAAACAAATGGGCACTCAGTCAACTTGCCACCCTCCATCACCCCTAAACTGCACCCCCCTCCAAGGCTAGGCAGGCCCCTAAACCTCCGACCATATGGAACACCAAGTTTGTATAGTGGGGTGGCAAACAGCTCCTGTACCAGCATGTATGAGAAGACCTTTCCTATCAAAGTTGTGCAGAGCCCAACACACAGCACCTCATCAGGGCGCATGCACAATGCCAGGccctgcagcacagcacaggaGTCTGTCTGTGACGAGGAGAAGGAGGTCTACAGGCAACTTCTGACCATGGTCTCTGGTGGTCAGTCGTCTTTCCTTCACAACGGCAGTTCACACGCCATCGTGAGATCACACAGAGATTTCACCAGCTTCCTGACCACCAGCCGCAGACTGCTACAGTTCTCTTCCCTTAGTGGGTCAGCAGCAGGAGGAACTTCAGAGGGGCCCAGCAGCCCCCCCAGCCCCAGGGTGATGTCTAGCCAGAGCTCTAGCAACCTCCCCAGCCCAGTGGGGGCCTCCAACAGGCCAGAGATCCAGACGTGGTCTCTGGACATGGACCTCAGCTCCAGCAGAGCAGCTCCTCTCACATCAGCCCCATCCCCATCCGCTCTGCAGGATAACTCCTCTCAGGACACACAATCATCAGCTCATGATGGTGATTCGGTAATTATTGTAAATGAGCAAAAGGGTAAAAAGCAAGACAGCTCAAGTGTGCCATGTTTCCAAGCGGAGTTATGGATCAAAGAATTGACTAGTATGTATGACTCCCGGGCGAGAGAAAGACGGAGACAGATAGAAGAGCAGGAGGCCCTGGCTGCCCAGCTGCTGCGACAGCGCCTGTCTGAAGAGGGGCACCGTAGCCCAGATGTGGAGGTCCACGTTCGAGTTCCTTTGGAGAAAGAGGTTCCTTTGACTCTTGTGATAGAAGAACCGAAGCCCTTGGAAGAGAAACCAGAATTCCCTGAACTCACAGAGGAAATGGAGGCTGAGGTGAACAGGGGGCTGAGACGAGGTAATCATGAAGTTTTAAGTGAGGGTTTTGGTCTCAGCCTTACACGCAAAGACCTGCAGACACTCAGCAACCTCAACTGGCTCAATGATGAGGTGATCAACTTTTATATGAACCTGCTGGTGGAGCGAAGCAAGGACCCCAGCCTGCCATCAGTCAACACGTTCAACACTTTTTTCTATCCCAAGCTGCGCAGCAGTGGCTACTCTGCTGTCCGCCGCTGGACCAAAAAGATGGACATCTTTTCTAAAGACATCCTACTGGTTCCTGTCCACTTGGGGGTGCACTGGTGCCTCTCTGTGGTGGATTTCCGTAAAAAGGCTATAATGTACTTTGATTCCATGGGAGGAAACAATGATGAAGCATGCACAATATTGTTTGATTACCTGCAACAGGAAAGTAAGGACAAGAAAGGCAAAGAACTGGATACCTCAGGCTGGACTCTGCACAGCAAAAAGCGCAATGAAATCCCACAGCAGATGAATGGTAGCGACTGTGGAATGTTCACATGCAAATATGCAGATTACATTACCAAAGACAAGCCAATCACATTTACACAGAAACACATGCCCTACTTCAGAAAAAGAATGGTTTGGGAGATTCTGAACCATAAGCTGTTGTGATATCAGTATGAGGATTGTGAACTTGTATGCCATGACGATGGCTGAGCTACTCTCAACAGCAGGATCTACGATCTACGTACAGTAGTCCTGTTCTGGGAAAGACTTGCACACCAGCTGATCAGATCAGGAACCAGCTCTGCTACTCTGCATCCTCTACCGTCTGTCTATCTCTCAACTGATCTTAGATGATGGGATGTTGCTGGAGCACCAAGCACTGCCTCCCagtccttgttttgttttttggtgcACCCATGGAGCATCCGTATAGCAGCTGAAACGCTGCATGTTTTGTAGTGCCCAGCCAGAATTGTACAGACTTGCAAACCATACTCTGAGCTGCAATGTTCAGTTTAATGCAGACATATAatgtttacatgttttgatCTTACAGGGAGATGAGCACATTATGCTGCATCATTTTTATAACAGTAATACTACATTTTGGCGTCTCTGTCAATGTTTGATACTTTTGGTACGTTCAAAGGACGATTTACTTTACCATGTAAACTTTGAATGGCCTCTAGTCTTAAAAATAGTTTCTTTGTATTTAGTCATGAGACCTTTTTTCGTAATATGAACATTTTACctaaaacagaactatttttgtaattaGTTTGATTAAAAGGCACACAAGTCTTCAAACATTGCCTCAGAGTATGATTTATAACGAAATAGAATGTTTTACCTTGCCACGGACCTGCAAGTATAAAAACAGTCTTAGTTACACCTTAAAACACCaggataaaaaaatgtatgttagTCTTGATAAAATATTGTAAATTAAGGTTCAAAGTCTATTTTATGTATGTCAGATTCTTCTTTTACAGCAACTTTTGGGCACATTCAGTCTATTTTGAACTGTGTACATACTTAAAACATATACTGGCTCTTGAACAGTGTAATATACTTTTTCTTTACGCAtttcttatatattttttatctagattcaagtgtgttttagaaaataaattctTGTATTGTGACTGTTCTTTGTGAATTACCTCAAAATCAATTGGTTTTGATATAAAAACTGTCACATTTGATAAACATGAGAACCTGGCCATGTG

Function

GO: NA

KEGG:

id description
K08592 SENP1; sentrin-specific protease 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639095.1 lncRNA upstream 253496 20772453 ~ 20779399 (+) True LOC120558354
TU68681 lncRNA upstream 280550 20751595 ~ 20752345 (+) True G51386
XR_005639130.1 lncRNA upstream 370342 20661297 ~ 20662553 (+) True LOC120558477
TU68645 lncRNA upstream 500326 20446243 ~ 20532569 (+) True LOC120559772
TU68590 lncRNA upstream 867680 20161419 ~ 20165215 (+) True G51317
TU68980 lncRNA downstream 174683 21220651 ~ 21222557 (+) True G51625
TU69050 lncRNA downstream 184302 21230270 ~ 21233529 (+) True G51685
TU69089 lncRNA downstream 231808 21277776 ~ 21288705 (+) True LOC120559383
XR_005639244.1 lncRNA downstream 231830 21277798 ~ 21288402 (+) False LOC120559383
XR_005639243.1 lncRNA downstream 231848 21277816 ~ 21288402 (+) False LOC120559383
XM_039800108.1 mRNA upstream 1700 21025140 ~ 21031195 (+) True LOC120558837
XM_039799489.1 mRNA upstream 9734 21020505 ~ 21023161 (+) True mfsd5
XM_039799488.1 mRNA upstream 13603 21007551 ~ 21019292 (+) True nr1d4a
XM_039799358.1 mRNA upstream 72070 20949302 ~ 20960825 (+) True calcoco1a
XM_039800291.1 mRNA upstream 273450 20755053 ~ 20759445 (+) True cbx5
XM_039801494.1 mRNA downstream 25739 21071707 ~ 21166417 (+) True lrp1ab
XM_039801495.1 mRNA downstream 25739 21071707 ~ 21166417 (+) False lrp1ab
XM_039801064.1 mRNA downstream 217080 21263048 ~ 21268246 (+) True wnt1
XM_039801051.1 mRNA downstream 249179 21295147 ~ 21308168 (+) True lmbr1l
XM_039801053.1 mRNA downstream 266584 21312552 ~ 21317922 (+) True dhh
TU68644 other upstream 500433 20446243 ~ 20532462 (+) False LOC120559772
unassigned_transcript_229 other upstream 707654 20325169 ~ 20325241 (+) True trnaf-gaa_3
unassigned_transcript_228 other upstream 711313 20321511 ~ 20321582 (+) True trnah-gug_9
TU68517 other upstream 1032457 19996511 ~ 20000438 (+) True zgc:194242
TU69094 other downstream 243620 21289588 ~ 21290962 (+) True G51716
TU69116 other downstream 315322 21361290 ~ 21363640 (+) False G51734
TU69117 other downstream 315322 21361290 ~ 21364430 (+) True G51734
TU69195 other downstream 512922 21558890 ~ 21559349 (+) True G51804
TU69309 other downstream 737298 21783266 ~ 21788322 (+) False LOC120559721

Expression Profile