RNA id: XM_039800108.1


Basic Information

Item Value
RNA id XM_039800108.1
length 2233
RNA type mRNA
GC content 0.40
exon number 12
gene id LOC120558837
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21025140 ~ 21031195 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGTATCTGCACGAGTCTTAACTGCGTTGTTTTGGGATTACATCACCAAATCGTCACAGTGTCCAGTCTGAGCAGGCAAGAAGAACACTATCTATCTGAGTTCCTTTAGCTATAGACTCTGCAAGAACTACACTATCAAGAAGGAGACACCATAGCCCTATTGACTGGTTGGGATACAGAACAAGACAACATACTGCAGGACGACAGACAGGCATCATGACAAAGGGCAAGCTTTCACTTGCAAACAAGGCCACCAATGGCTCCTTCAGTGAAGAAGCCTTAGTGTCACCAGCTCCTCCCAGCTATCAGGAAGCCACCGAGGGCACCAGTGCTCCTTGCTACAGTGATGTTGAGATGCTCACAGAGTTCACCTGGGATGATTGCAACATCAGGAGGGTCTTCATCCGTAAGGTGTACACTATCTTGTTGATCCAGCTTTTGGTCACTCTCGCTATTGTGTCTCTTTTCACATTCTGTGACCCAGTGAAGGACTATATTCAATCCAACCCAGGCTGGTACTGGGCTTCTTACGCTGTGTTCTTTGTCACATATCTCACCTTATCTTGCTGCTCTGCACCAAGGAGACAGTTTCCATGGAATCTGATTCTGCTTGGCATCTTTACCCTCTCACTCTCATACATGACAGGGATGTTGTCCAGCTACTATAACACCAAGTCAGTGGTGATGTGTCTGGGCATCACAGTagcagtctgtctcctggtcacAGTCTTCAGCTTCCAAACtaagTTCGATGTGACATCATACCAAGGCGTgctctttgtcttctgcatGGTCATGTTCGTCTCTGGACTGGTGCTGGCACTCGTCCTCCCCTTCCAATATGTACCCTGGTTGGATGCCACCTACGCTGTCCTGGGAGCCATACTGTTTACCATGTTTTTGGCATTTGACACCCAGCTACTCATGGGGAATAAGCGCTACACCATGAGTCCAGAAGAGTATGTCTTCGCCACTCTCAACCTCTACCTAGATATTATCTACatcttctccttcttcctccaaaTCTTTGGAACTAAACAAGAGTAAACCATCGCCCCACCTATCTTACCTACAGACAAGGAATGGGAATTTAGGCAGAAATAATAAGAGTATTTTAAAATTTTGGTGATTGTGATGACAATGTTTGCAATTGTAAcagctttatttttttgcctGATACAGATAAGGCCACAAATACTTTGTGAGTCTTGTGTATAGCTATACATGTAGATAGATGTATGTCAGTTTTCACTTCCAAAATGTACACaacctttccctcttctctagCATGTCGTGAACCCATACCACATTATGGGGTTAGCTTACTAGTTTTACCAACAAGAAACAATCAGTGATCTTCCTCCATTTAACGTAGATAAAGCATACTGTGAGTGTACATCTGAAGCTGTATGTCTGTCTTTATGTCCTACCTAGATATCACAAATGTCCTGCAAATAATAGATGTCAGTGCTCTTTAAGAGGTATGTGAGCTATAATACATCGTGCATGGCTCTTAAAAAGCTCTAACTATGCCAAGTGTAGTCACCCCATCATTGGGATATTGCTGTGGGTGATGATTTAGTGACGTGACTGAAAGTACaccaaaaaaaaagcttcaaagaCTTTTCCTTTTCATTATGGTCTATGTGTTGGTTTTACTACATTTAACTCTAAGGCTTTCATTCATTGCATTCACCTTGTTGTATTGTTTATAATTAGTATGTCATTTTTCTAATATGTGTGTTTAAACCTGAAATGTTTTGAATGAAGATTGTGTATAATAATCTTTTCATGAAAGGCATTTAGTTTGGACATTTCTTGATTGTTGGCATTATAGTCCTTGGTTTTTATTAATATGGAAACGTATTCAGTTGGTTTGAAGTGGTGACACCATCATGATGATAATAAAattatttaacattaaacatGACAGTGCCATACATGCACAGATTTACTGTAACTTTTGATAAGGCCTGCATTTGTTGAGGGGCTTGAATGCTATTTTTCATGACatgacaagtttatttttttatgacagaATGATATATTTCAGAAAGTGTGTGATATAAAAATGGTGAGTTTGAAGTTTGAAATGAATTCATAAGTTGTCTAAAGTGGCCTTGGACTACCTTTATTTCACAATATTGATGCAGTATATTGCATTGTCCCTGCATTTCATGAAGcatttgtgtttctgtattgatttattaaaggatgaatgtgtgtgaatgga

Function

GO: NA

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639095.1 lncRNA upstream 245741 20772453 ~ 20779399 (+) True LOC120558354
TU68681 lncRNA upstream 272795 20751595 ~ 20752345 (+) True G51386
XR_005639130.1 lncRNA upstream 362587 20661297 ~ 20662553 (+) True LOC120558477
TU68645 lncRNA upstream 492571 20446243 ~ 20532569 (+) True LOC120559772
TU68590 lncRNA upstream 859925 20161419 ~ 20165215 (+) True G51317
TU68980 lncRNA downstream 189456 21220651 ~ 21222557 (+) True G51625
TU69050 lncRNA downstream 199075 21230270 ~ 21233529 (+) True G51685
TU69089 lncRNA downstream 246581 21277776 ~ 21288705 (+) True LOC120559383
XR_005639244.1 lncRNA downstream 246603 21277798 ~ 21288402 (+) False LOC120559383
XR_005639243.1 lncRNA downstream 246621 21277816 ~ 21288402 (+) False LOC120559383
XM_039799489.1 mRNA upstream 1979 21020505 ~ 21023161 (+) True mfsd5
XM_039799488.1 mRNA upstream 5848 21007551 ~ 21019292 (+) True nr1d4a
XM_039799358.1 mRNA upstream 64315 20949302 ~ 20960825 (+) True calcoco1a
XM_039800291.1 mRNA upstream 265695 20755053 ~ 20759445 (+) True cbx5
XM_039800288.1 mRNA upstream 274449 20747188 ~ 20750691 (+) False nfe2
XM_039800106.1 mRNA downstream 1700 21032895 ~ 21045968 (+) True si:dkey-21c19.3
XM_039801494.1 mRNA downstream 40512 21071707 ~ 21166417 (+) True lrp1ab
XM_039801495.1 mRNA downstream 40512 21071707 ~ 21166417 (+) False lrp1ab
XM_039801064.1 mRNA downstream 231853 21263048 ~ 21268246 (+) True wnt1
XM_039801051.1 mRNA downstream 263952 21295147 ~ 21308168 (+) True lmbr1l
TU68644 other upstream 492678 20446243 ~ 20532462 (+) False LOC120559772
unassigned_transcript_229 other upstream 699899 20325169 ~ 20325241 (+) True trnaf-gaa_3
unassigned_transcript_228 other upstream 703558 20321511 ~ 20321582 (+) True trnah-gug_9
TU68517 other upstream 1024702 19996511 ~ 20000438 (+) True zgc:194242
TU69094 other downstream 258393 21289588 ~ 21290962 (+) True G51716
TU69116 other downstream 330095 21361290 ~ 21363640 (+) False G51734
TU69117 other downstream 330095 21361290 ~ 21364430 (+) True G51734
TU69195 other downstream 527695 21558890 ~ 21559349 (+) True G51804
TU69309 other downstream 752071 21783266 ~ 21788322 (+) False LOC120559721

Expression Profile