RNA id: XM_039800195.1


Basic Information

Item Value
RNA id XM_039800195.1
length 9862
RNA type mRNA
GC content 0.51
exon number 34
gene id LOC120558875
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20174157 ~ 20271307 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttgtgcTTGTGGTTGACTTTGGAGTGAGTTTTACACTTCTGACTTCCCAGGCGGGAGCTGAAAAATCAGAAGAGCAGTCTTGACATTTATGTGAGTATTTGGAGCTTCCTGTCTCTGTGAATGGTGAGGCACTCTGGACCAATGGGAGGTTCAGTGCTGAGGATGCAACAGTGATCCAGGAAAAAACAGCCCATTGTTTCTGGGATGTCGGAGAAGTGTGACCACCCTCCTGCCGGCTCTGGCTGCTCGTTCTAACGGCACACTGAAGGACCCAGTACCCCATTGAGAGGTCAGTATGAGTGGGGGAGTCAATGTTAAGTCGCCCCCCCGGGCTCCTCCATCATCCGGAATTCCCCTCCCACACAGCCTGTTGCCCTCCTCCCCCAAAGCAGACACCCGCCACCGGGCTAGTGATCTACCCAAGCCCTCAATACAGACAcctaaacacacacccacacacactcccacacacacacccaggcaCTCTCCTTTACTTTGCCCACGGACTTCCAGCATCCCTGGGCCATCCTCCAGGGACCCTAAGAGAGATGCCGGCCTGAAGAGTCAGCTCTTCCAGCGGATTGGAGCTCTACCTGCTCCCCAGGTGTCACGCTCCGCCTACAGCAGCCCAATAACCCAGCGCAGGGTACCAACGGCATACTCCAAAGACACACTGGATCTGGGAAAACCTGCACCGCCTCACATCCGCTCACAGTTTCCACATGATGGCAATCGCAACAGAAACCCCCTCGTCAATAAGAACCAAACATGGGGAACCAGCAACCTGCGTCCACCGCTCCACTTCTCAAAAGGAGACAACTCCAACACTGTATCCCAGGCAACGAGTGAGGTCATGCCACAACGAGAGGAGGAGCTTCCAGAAAACCACCAAGCCCAGTCCACCATGTCGAACAACGTCAACCTCTGCCCCTCTTTTGCTCAAACGAGCTACGAGCACGCCATCAGAGGCCGCAGTGAGTCCACCAGCCAATCAGACGAGGAGATGGGTACTCCTGACGACAGCAGTCCGGCCTGCTCTCCTTGTCCCCTGCCGCTGCCACCGATCCCATTCTCCATGCCAGTTATGTCCAAGGTGGCTGTCAGTATGCTGGATCAAAGCCTAGATAAGGAatccacagagagacacacacctcGAGTTAACATGGCTACTGTGGCTCCCTTCAGCTACAGGCTGCATGTGCAGGAGAGCGATTTTTCAGTGGACGAACTGAGTGACTGCTCTTCTGGATCCATAGAAGTCTGCTGTGATGACCTAACACTAGGAGGGATGCTGGAGGCTAATgtggctaacattagcatgaCGGCCAAGCCCAGAGAGCTGGACTTGAGGTCTGCTGCTGTCTCCTGCCAGGAAACTTCAGCCCATGCCATGGCCTCTAGGAAGCCCCCAGCCAAGCCCTCTGCTCTGCCCCAGGGACCTTCACGTCCCTCCGGGTCAGAGCTCAAGGTCTACCGGCCCTCCTCTGGATCCATCCCAATCCCAAATCCTTCTGGTCTCCGCAAGCAGCGATCACTTAACAACTTGTGTGTGCTCACTGATGCTGAGAAGAAGCTGCACCTGTACCAATCTGATACGAGTCGGCCTGGCACTGGCACCAACAAGCCAGGCCTGACTAAGACAGGTCAGGCTGGGGGCGGGAGACAACCACTTTCTCGGACCCTTTCAAAGTCAGAACAGTCTCTTTTTCAGGGGAAGCCCAAACCTTTCTGCTCCCCACCTGTGACTTCTAACGGGAGCAAGCCGAGTCGAATCCCTGCTCCTGGTAAACCACGAGGACCTTATGCTGAGGTCAAGCCCATCAGCAAGGCCTCCGAGGCGGGCCACAGTGTAGACACGGACCCTGCAGACCACCCAACCGAGGCTAACTCCAATGGAGCTGTGAATACTGGGACTAATGGCAAGAAACCAGGCGAGAAGGGGAGATCTGCAGCTCTGGCagcagaggagaagagagagaggaagggaataGAGGGAGAAGATGATAAGAGCTTTCTGAAGGTGGACCCAGAGTTAGTGGTGACAGTTCTGGGAGACCTGGAGCAGCTGCTCTTCAGCCAAATGCTTGaCCCAGAGTCCCAGAGGAAGAGGACAGTCCAAAATGTTCTGGACCTTCGACAGAACCTGGAGGAAACCATGACCAGCCTGAGAGGAGTGCAGCTTAGCCACAGCTGTGTGGAGGGGACCATGTGCTACGACAGCGATGAAGCTGCTGCATTCTCAATATCCAGCCTATCAAATCGCTCCTCTCCGTTGTCATGGCGCCAGGGTCAAGCCAGCCCCCGTCTGCAGGCTGGTGAAGCTCCGTCCACAGGTAACACCAAGTCAGACATCCCTCTCCGGATCAGCCACACTGCTCGTATCCAACTCATCGAAGCACTGGACGACTCGGATCCGTCCCTCCTGAAGGGAGATTACCTCAGCAACAGCAACCTCGACAGGAAGAGCCCAAacgaggatgatgatgatgatgatgatattgatgatctGGGGAATGGTTGGGATGAGAGCAGTTCCATCAGCAGCGGTTTGAGTGATGGCTCAGACAACCTCAGCTCTGAAGAGTTCAACACGAGTCCCACTCTCAACTCCCTTCCCACCACTCCCATCGGCTCCCGCAGAAACTCAGCCATAGTGATGCGTACAGATGCAGAGAAGAGATCTCTGGTGGAGAGCGGTCTGTCCTGGGACACTGATGACACAAAACCCAGCCGCAAGAGCCAGGGCAGCGGCGTCTATGATACAGGAAGTCTCAAGTCCGAATCAGCCAATAAATGGAAAAAGACCCGGACGCAGGGTGAGGGGCTAGATGGAGGGAAGGGCGAACTGAAAAAACCTCAGACCCTGGGTCAAGGAAATGTGTTGAAGAAAGGAAGACACCCACCTGTGGGAGTCACCTCCCCGATCACACACACCTCTCAGAGTGGGCTGAAAGTGGCAGGTACAGTAAAGTCAGATGGGAAGCCAATGGATAAGTCTCGGTTAACAGTGAAGAACTCCGGCCTTCAGCGCTCCTCTTCTGATGCCGGTAAAGACCCCAGAAATGGCACCGGGGCTGGTGAGCAACGGAAACCTCCGTCCGGCCTTGTAAGGCCCTCAACTGGTGGAAACTTTGGCTTCAAGAAGCCTACCACAGCTACCAATAACGGCACAAACAATGCGGGGAAGATTCCTAAAACTTCGGGTATTCCTGTCAAACCAGggactggtggtggtggtggtggtggtggaggacgTAAGACAAGTCTAGATGTTTCAAGCACCGACCAGAGTGGTTTTCTATCTCCAAATGCCAGGACGTCTCTCCAGTACCGCTCTCTGCCTCGCCCAGCTAAGACAAACACCCTGACTTTAACCCGGCCTAGCTCAGCTCGCCCAGTGAGCACTACCATGGACATGGTAGGAGGCTCGGGGCTCAAACCGCCCCAGGGCTCTAGGCTCAAAGAGCCCGCCTCAGGGCTTGGTTCTGGGTTAAGTAAAGCAGGTGGTCGTGGGATCCCGAGTCCCAGTCCTgtcaatcagacagacagagagaaagagaaagagagggccAAAGCCAAAGCTGTAGTATCTGACTCTGAGTGTGGAGGTGGGTCTCTGAAGGGCAGCCCTGCTCAGACTCCCTCAGAGAACGGAGGTAAGCTGCAGGGGCTGCGACCTCCCAGCAGTGGCAAGGGCATGGATCTGCCCTCACCGAACACACACAGGTTATCTGGGATGCGCAGCCTGGCAAAGCCTCCATCCATGGCCCATCTTGACAAGCTGAACTCAAACAGCCTAGAGGTAGAAGTTCAGGACTCCCTGCCACCTAAGATTCCTCCCTACTCTAAGCTCCAGGACCTGACTAGCTCAGCAGGCAGCTCCACTGGCCCCTGCCTGACCCCCAGCCCTGCTCCTTTACTTAATGTGAACTCGTCAGCCTGCTTCTCAAGCTCAGGAGCAGGGTTGGGGCCAAGGCAGGTCTCTTCTCTCGGGGTTCAAGGGAGCACCTCTCCCATTATCTACCCTCGTCTGTCTGGGCTGCATCGCAGCATGGAGTCGCTGCAGCTCACAATGAGTCTGGCCCCAGAGCCCCAGGAGAGGGAGAAGGTGAGGGAGAGGGACAATTTGGTGAGAGGCTACACCACCTTAGAGTCCCGGCACAAAGATAGACAGGAAGACAGAGGCCCTCCTGCCAGCTGGAGCTCTGGAAGTAAAGTATCATTGTCTCTCACAGACAGTtctcagagagacagaaacacactgccAAAGAAAGGTTTAAGTTTTAGCGGTGCCTCCCAGGTtgaggaggaagggaaggagaaaggggagaggagaCACTCTCATACTATTCTCAGTATGACCGACTCTCTCAATCTTCCACTGCTGTCCTCACCCACCTCCCTGCCCCGCACCTCTAAAACCAGTATGGTGCCCAGCCCTGTCGGCGGACCTCCGAGGATGACTCGATCCAACAGCATCCCAACGCACGATGCCTCTCTGGAGCTGTATGGAGCGTCTCCGCTGGGCAGCACACTGTCGCTGGCTGAACGCCCCCGCAGCATGGGAATGGTTCGCTCCGGATCCTTCAGAGACAAGGAGCCTGACGAGGTTCATGGGTCTGTACTCTCTTTGGCGTCCAATGCCTCGTCAAGCTACTCCTCGGCTGAAGAAAGGATTCAGGGAGAGCAAATACGTAAGCTGAGGAGGGAGCTGGAATCGTCACAGGAGAAGGTGTCTAACCTAACGACACAGCTGACGGCTAACGCAAATCTGGTGGCCGCCTTCGAGCAAAGTTTGCAACTGATGACAACTCGTCTGCAGAGTCTGTCAATAAGCCAGGAACAGAAGATCGGTGCAGTCGCGGATGTGTTTGTGGAgagagttccagagggagggggcagctatggagaaggctctgtcacCCCAGGTCCGGCGCTTGGTCCTGAGTGGTGGAGACAGAAGGTTGGCATCAGAGGAGCGGAGGCTGCGgacacAGAGCTGGTAGAGCTGAGGGAGACCATCGAGGCTCTGAAGGCCAGGAATGATGAAGCCCAGGCTGTCATACAAGGAGCCTTAAACAGCCCGGATAATATGAAAGACGTGCGGATTCGACGTCAGAACTCATGTGAGAGCATCTCCAGTCTCAACAGCCTGACCAGTATGTCGAGTGTGGGCAGCTTCAAGGACCAAGAtgccaagaagaagaaaaaaaagagctggCTGAGGAGCTCCTTCAACAAGGCGTTCAGCATTAAGAAAGGCTCAAAAACGTACTCAGACATCGAGGAAATTGCCACCCCTGACTCCTCAGCTCCCAACTCCCCAAAAATGCTCCAtgagggaggagaagaggacGGAGAAAAACAGCCCTCATCCCTCAAAACATCGGCCTCCGCCACATCTTCTGTAATCATGGAGACTACAGAAGAGGGAGACATTGAGGAAACGGCGGTATCAGACTTGCGCTCAGAACTCTgggtgaaagagagagaactgACAGACATCCGACTGGAGGCCTTAAGCTCTGCACATCAGCTGGAGCAGCTTCGAGAAGCCATGAACAGCATGCAGTCAACAGTGGAGAACCTGAAGGCAGAGAATGACCATTTGAAAACAGGCTCTGGTCCCACCTCTTCCACTTCCCAGCCTTCAGGCCTGGCCTCTCTCCTGGGGCCCTCACTGCGGCAGCCGATGAGCATGTCCCTCACCAAGTCATTCAGCCTCAGtctgaatgattgtaaagatccAGACGTGTCTCCAGCTGACACGTTAAGTGTGTCTTCCCAGAGGGATGAGGTGTGTGCACGAGTGCTTGTCCGCATTGGAGATCAAGCAGAGGACAGTAAGCAGCAGCAGGAGTTCTACCTGGGCTCAGTGATGGTCAGTGCGAGAACTGACTGGTCCTGTCTCGACTCTCTAATAGCTAAGACCTTCAAGGACTACCTAACTCAGGTGGACCCGACCGCcagcctgggtctgtcctgtGATTCGCTGCACATGTACCAGCTGACCCAGGGAGGGCAGAGGGTGATAGGAGGGGACAAACCTCAAGCCTCACCTTATCGTTGTCTCAGCAGTGGTTCAGCTCGAATACTTGTCACTTTGAAAGGTCTCAGAGAAAAATGTGTTGACTCACTGGTGTTTGAGACTCTGATTCCTAAGCCGATGATGCTGCACTACATCAGCTTGCTGCTGAAGCACAGGCGTCTGGTTCTGTCCGGGCCCAGCGGGACAGGAAAGACTTACCTGGCTCAGCGTCTGGCCCACTACCTCCTGCAGCGCAGCCGGACAGACTTGTCTGAGGCCGACCACGAGACCTGTCTCCTCGGTTGCAGCACTGCCGTCACCTTCAACATGCATCGTCAGTCACTGAAGGAGTTGCAGTTGTATCTGTCCGACTTAGCAAATCAGATAGACAGAGATAGTGGAGGAGAACTGCCACTGGTTGTTATCATAGATGACATCAGTGATTCAGCAGCCACCACTGAGCTTGTTAATGGAGCACTCACCTGCAAGTATCACAAATGTCCTTACATCATTGGGACAACCAATCAGCCTGTGAAGATGACATCGAACCACAGTCTGCACCTTAGCTTCAGGATGGTAATGTTCTCCAACAACGTGGAACCAGCTAACGGGTTCCTGCTGAGGTACCTGCACCGTAAAGCTGTGGAAGCCTACCAGGAGAAAGAGCAGGACTCAGCACGCCACCAGGCTCTCCTCCGCGTATTGGACTGGATCCCTCAGCTCTGGTACCACCTCCACACGTTCCTGGAGAAACACGGCACTTCAGACTTCCTCATAGGTCCTTGCTTCTTTCTGTCATGCCCAGTATCAGTGGCAGAGTTCAGGCAGTGGTTCATTGACCTGTGGAACCACTCCATCATACCGTACCTGCAGGAGGGAGCCAAAGATGGCATCAAGGTGCACGGGCAGAAGGCAGTATGGGAGGATCCAGTGGAGTGGGTGAGAGGGACTCTCCCTTGGCCCAATGCACAGCAGGACCAGTCCAGGCTCTTTCACCTACCTCCCCCCAGCATAGGTCCACCCAGTGAGGAAAAGAAGCCCCCCAAAGATACACCTCCACCCAGCACACTGGAGTCAGACCCACTGATGGCCATGCTGTTGAAACTCCAGGAATCGGCCAACTACATAGAGTCTCCAGAGCGGGAAAGCTGTCTGGATCCCAGTCTGCAGGCTACACTCTGAGAACAACATGCGACTGTCGGTCAAGCTTTGGAACTATAGACTCTTTTTCACGACTCACGCAGCGGGTGCAGTCCCAATGAGACTTAAAAGACTCAATAATTAACTGTGTGCTCAGTGAGCAGCTACAAAGCTAATTGTAAAGGATCTATAGAGAGAGTGATTATGGACGAAGGGCTTGCTTTGCCGTGCTATCAGAAAGACAATAAAACTGCTTTCATAGGAAGCTGTGATGATCATGTCAGGGAAAGACTTGTCTACTCTCTGCCCTCAATTTGTTCCAGATGGGTTGTTGTTGAATCTGCAAGTGCATGGTAACCGGAATAGTATGATGCAAAATATTACCTATAATCCTATTGATCAAGAcccattcttttcttttcttttgctttttgacTGCCACGACTTTCACCCAAACTATCGGTGCTTACTGGTTTTCTTTGATGGCTTCATTTCACAAAGAAATTCACCTCAGAAGTAACTCTGATGTCTTCAAAAGTAGGATCATCACTCGACATCAGCCAAAAATGCACTTTATTTTCTACTTGTGGTAATTGGATTTTAGGAGGCTGTGTCAGTGACTGTGTATCATATGGGAATCATGCAGTTCATTAGTTATTCCTCTAGATGGCAGCATTTACTCCTGCCTCAGTGCTCTCCTGGTGTGCTTTCTGACTTATCAAAGGTGCTCGGTAGAATATAACACACTCTCTATAACACAACTATGAAAATGgccttgaattatttttttcttttcagttcaACCATGGTGTCATTAATGGATTGAATATTAGAACTGTGAAGCTGTTAGAGTAACATGCATGGGCGAATaatgaatgcaaaaaaagaatCGGTTTTAGGGTCAGtctgtgaaaaaaatgtcatcatCGGTGGACTCCACCAGTAGTATCCACTTGTTTCCTCTAGTAATATACTGATATAACCACAGTAACTGGCATTGACTCTACTCAACATACTGTATTGTAGACACACAGAAAAGAACTGCTTGTTTATCTAGTCTGTCCAAACGGCCTACCATTTCTGGCTATGCTTGCATATATTCTGTATTTAGATATCGGTTTTAAAACACAAATTTCTCTGGTGATAGACAAGGATACAGCTTTGAAAATCTTGATTTTTTAGGATTTTATACTGAGTGATGTTCAACAATCATCTGTACACAGCAGCTCTTACCTACAGTATACCTAACATGCCATTACCGACTGTTTTGATCATTCATCATCCCACAAGGGgaagtggagaaaaaaaactgccatCAAGTGAATGTgtacaaaaacattttccttCCTCGTTGCATTTGCTCTTTTTATCTTTGATAACATCCCTTTTTTCAAGGTGTAGAAATCGGTTTCCTTCTCTTGCTTTATTTTAAGAGTTACTGTAACAGTAAGGGATGGGGGTAAGAAAGGTTGAAACTCATTGTGTCAAGTGGCTTCCtcctatttcttttctttgtttgtttgcacaTAATATATGTTAGAGTACTAGATTACAGAGAGTATTTATTGCTCACATCTTGACTGTTGAGTCAtgtgaagaaagaagaaagcatAAAAAGATGTCTAAGAGGAGGAAACTGTAGGTAGTAGAGATATTCTTAAACCTCTCAGCCCTGTGCCCCTTTGACCCTGAAGTACCTCAGACTGCCATATTCTGTCCGGATGTTCCTCTACTGTCCAATAGGGTGCTGGTGTAAAGTAGAGACATGATGCCTAAGTCTATCTGTGCCTAAAACACAATTTGGCCTAAAGCTGCTTTCGAGGTGCTTTAATCTACCACACGGAGGCCTCTATTTAGAGGAAACATCATCACTTCCTCTTACCTACTCTGATGTCACTTTAATGTCATCACCTTGATGCCCAGATCTTGGTGGAGAGTGGGTTATCAATGTTAACCTTTGGCATGGTGATAAGCTGTTAGTtaagatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagttagCTCTGAAATAGATGAGAATGTGTATCATGACTGGGCTGCTTGCATGCAGTTTGGCACCATTTTAAACTTAAGCGTGAAAGACTTGACATCTTTGTGGAATTGCCTGAGAGTTTGGAAGCAGTGTAAGAACAGATATTAGCGGATGTGGATGCATGTAGCCCCGATATGCTCCTAAAGTTTCGTTTCATTGGACCTAACACACTTAACCCTATCACAGGAGGGATTTTTATTGACTGGATATTTTCCTCTTTTCACGTTGTTTTTAAGAGcagacatttgtttttcttatgcaaatatttgtaaaggtttctttctcttttgtaCATGACATCACTATTGTAAACATTGTAAATAGTGCATCTGcgacaacaatcacaaaaaatgtGTAGAGATCTAAGAGAAGGCATGGCCCCTGTATGCAGAAAACGGCGTCCTCgttgtttttattgtcttcCTCCAGTGGGAAGGAGCACTTAAAAGGGGGCCTAATAATGGTTGTATGGCATGTCTctataatcacatcaaatcCCATATGTCTAACAGTGAGCAATGGACACAATAAAGTCATGCCATTCGTCACATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68592 lncRNA upstream 7841 20157789 ~ 20171119 (+) False G51317
TU68590 lncRNA upstream 13745 20161419 ~ 20165215 (+) True G51317
TU68552 lncRNA upstream 114617 20063992 ~ 20064343 (+) False LOC120558901
TU68535 lncRNA upstream 182844 19995881 ~ 19996116 (+) True G51283
TU68534 lncRNA upstream 186767 19990773 ~ 19992193 (+) True G51282
TU68645 lncRNA downstream 174936 20446243 ~ 20532569 (+) True LOC120559772
XR_005639130.1 lncRNA downstream 389990 20661297 ~ 20662553 (+) True LOC120558477
TU68681 lncRNA downstream 480288 20751595 ~ 20752345 (+) True G51386
XR_005639095.1 lncRNA downstream 501146 20772453 ~ 20779399 (+) True LOC120558354
TU68980 lncRNA downstream 949344 21220651 ~ 21222557 (+) True G51625
XM_039800213.1 mRNA upstream 59215 20100912 ~ 20119745 (+) True LOC120558885
XM_039800226.1 mRNA upstream 83359 20080289 ~ 20095601 (+) True tead3a
XM_039800231.1 mRNA upstream 84851 20079526 ~ 20094109 (+) False tead3a
XM_039800217.1 mRNA downstream 331 20271638 ~ 20290632 (+) True mybpha
XM_039800219.1 mRNA downstream 331 20271638 ~ 20290632 (+) False mybpha
XM_039800218.1 mRNA downstream 331 20271638 ~ 20287287 (+) False mybpha
XM_039800201.1 mRNA downstream 21415 20292722 ~ 20307269 (+) True LOC120558877
XM_039800202.1 mRNA downstream 21416 20292723 ~ 20307269 (+) False LOC120558877
TU68517 other upstream 178522 19996511 ~ 20000438 (+) True zgc:194242
TU68519 other upstream 178522 19996511 ~ 20000438 (+) False zgc:194242
TU68439 other upstream 410396 19767652 ~ 19768564 (+) False LOC120558920
TU68363 other upstream 716846 19456491 ~ 19462114 (+) False LOC120558947
unassigned_transcript_226 other upstream 1449409 18729480 ~ 18729551 (+) True trnaa-ugc_5
unassigned_transcript_228 other downstream 50204 20321511 ~ 20321582 (+) True trnah-gug_9
unassigned_transcript_229 other downstream 53862 20325169 ~ 20325241 (+) True trnaf-gaa_3
TU68644 other downstream 174936 20446243 ~ 20532462 (+) False LOC120559772
TU69094 other downstream 1018281 21289588 ~ 21290962 (+) True G51716
TU69116 other downstream 1089983 21361290 ~ 21363640 (+) False G51734